Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G150300.3 | Wheat | nucleus | 72.04 | 69.49 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 71.06 | 68.79 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 70.09 | 68.58 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 69.72 | 65.71 |
| OQU92338 | Sorghum | nucleus | 69.47 | 63.15 |
| Zm00001d029598_P003 | Maize | nucleus | 67.16 | 59.27 |
| CDX71498 | Canola | cytosol | 7.45 | 57.55 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 41.64 | 38.84 |
| CDX71499 | Canola | nucleus | 7.45 | 38.36 |
| Os02t0654400-01 | Rice | nucleus | 33.21 | 37.36 |
| Bra033662.1-P | Field mustard | nucleus | 35.16 | 37.35 |
| CDY22365 | Canola | nucleus | 35.04 | 37.08 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 37.85 | 36.86 |
| CDY58727 | Canola | peroxisome | 4.4 | 36.36 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 40.9 | 36.18 |
| CDY25235 | Canola | nucleus | 34.55 | 35.96 |
| Bra035961.1-P | Field mustard | nucleus | 34.19 | 35.94 |
| Solyc04g078050.2.1 | Tomato | nucleus | 40.29 | 35.33 |
| CDY30789 | Canola | mitochondrion | 34.8 | 35.01 |
| KRH61389 | Soybean | nucleus | 38.34 | 34.32 |
| CDY46486 | Canola | nucleus, plastid | 3.66 | 34.09 |
| AT5G43130.2 | Thale cress | nucleus | 34.68 | 33.33 |
| KRH52077 | Soybean | nucleus | 37.73 | 33.12 |
| KRH15434 | Soybean | nucleus | 37.12 | 32.51 |
| CDY68956 | Canola | nucleus | 21.25 | 31.64 |
| KRH05606 | Soybean | mitochondrion | 36.63 | 30.74 |
| AT1G27720.1 | Thale cress | nucleus | 26.25 | 29.86 |
| CDY60273 | Canola | nucleus | 25.4 | 28.97 |
| CDY03944 | Canola | nucleus | 26.74 | 25.76 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 24.3 | 24.78 |
| PGSC0003DMT400055395 | Potato | nucleus | 15.75 | 22.01 |
Protein Annotations
| MapMan:15.3.5.3.4 | EntrezGene:4333214 | ProteinID:ABF96848.1 | ProteinID:BAS84874.1 | ProteinID:BAS84876.1 | ProteinID:EEE59330.1 |
| GO:GO:0001075 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 |
| GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008134 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0045944 | GO:GO:0051123 |
| EnsemblPlantsGene:Os03g0441000 | EnsemblPlants:Os03t0441000-01 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| UniProt:Q10IZ0 | InterPro:RST | InterPro:TAF4 | UniParc:UPI0000DB42C4 | RefSeq:XP_015631228.1 | SEG:seg |
Description
Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed. (Os03t0441000-01);Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed. (Os03t0441000-02);Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed. (Os03t0441000-03)
Coordinates
chr3:-:18638520..18647607
Molecular Weight (calculated)
89448.6 Da
IEP (calculated)
10.086
GRAVY (calculated)
-0.934
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLIKLLDD DVDETMHSGA DVEAFTAALN REVEGSGGAS TSAAASSSQP LDHGAGLVPQ ESNSMFTHNH EQWQGSVKNE IGNQENQQQE QKHLHHSNEQ
101: PSRPELVSGG ADNKQDQPKV KQEPGNSSQQ SNSGQKQPLQ QMRSQQTPST NQTNSAPTVG KPPVVTFHML IPILRRHLDK DKDMQVQSIF TKLRKNEVSK
201: EHFLKVVRTI VGDKLLKQAA AQYQAQAAHG QRNPQTNPSN YSLLSQVSNQ QNVPSGSTSG VEHKSYPSAH SIPANQASDS PRPPFFRPSL SGQMQSNMGY
301: PSSESNLQKV NESSNMSDVK GGHMLSHPHN IQSAPGQATQ HPQTSLPVLG SNNIHARPLP RPVGGPIVPL RPQMADSSQR GQLVQGAVTS VTGSMAARPT
401: LQTNISPWQQ VNKEQKTKSF PPTEHTNKGV GVPENQPSTS GTSKSFNTTN SSQPHRSHGT QAEPNMQIQP ATQTPPPAAA SKTPQKKASA GQKKPLDALG
501: SSPPPSSKKQ KTSGGYHDQS IDQLNDVTAV SGVNLREEEE QLFSAPKEES RVSEAARMVV QLEEEKLILQ KGPLKKKLAE IMRKCNLKSI GSDVERCLSM
601: CVEERLRGFI SNTIRLSKQR VDLEKSRHRI YPLSSDVRSH ILRVNREARE QWDKKLAEDA ERIRKQSDGD DNAVVDSEKD KNESRSTSKH AKTYKAEDDK
701: TRTTAANAAA RVAAGGDDML SRWQFMAEKK KSKCDGDGSS GSMPGNMLPR TSSPKPGKGS REQQEIEKTG GVRRSSHVKV TRSITVKDVI AALEREPQML
801: KSSLLFQLYG RSPAESSAK
101: PSRPELVSGG ADNKQDQPKV KQEPGNSSQQ SNSGQKQPLQ QMRSQQTPST NQTNSAPTVG KPPVVTFHML IPILRRHLDK DKDMQVQSIF TKLRKNEVSK
201: EHFLKVVRTI VGDKLLKQAA AQYQAQAAHG QRNPQTNPSN YSLLSQVSNQ QNVPSGSTSG VEHKSYPSAH SIPANQASDS PRPPFFRPSL SGQMQSNMGY
301: PSSESNLQKV NESSNMSDVK GGHMLSHPHN IQSAPGQATQ HPQTSLPVLG SNNIHARPLP RPVGGPIVPL RPQMADSSQR GQLVQGAVTS VTGSMAARPT
401: LQTNISPWQQ VNKEQKTKSF PPTEHTNKGV GVPENQPSTS GTSKSFNTTN SSQPHRSHGT QAEPNMQIQP ATQTPPPAAA SKTPQKKASA GQKKPLDALG
501: SSPPPSSKKQ KTSGGYHDQS IDQLNDVTAV SGVNLREEEE QLFSAPKEES RVSEAARMVV QLEEEKLILQ KGPLKKKLAE IMRKCNLKSI GSDVERCLSM
601: CVEERLRGFI SNTIRLSKQR VDLEKSRHRI YPLSSDVRSH ILRVNREARE QWDKKLAEDA ERIRKQSDGD DNAVVDSEKD KNESRSTSKH AKTYKAEDDK
701: TRTTAANAAA RVAAGGDDML SRWQFMAEKK KSKCDGDGSS GSMPGNMLPR TSSPKPGKGS REQQEIEKTG GVRRSSHVKV TRSITVKDVI AALEREPQML
801: KSSLLFQLYG RSPAESSAK
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.