CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46486	Canola	nucleus, plastid	11.05	98.86
CDY68956	Canola	nucleus	65.69	94.0
CDX71499	Canola	nucleus	17.15	84.91
CDY22365	Canola	nucleus	75.35	76.61
AT5G43130.2	Thale cress	nucleus	81.83	75.59
CDY30789	Canola	mitochondrion	76.75	74.2
CDX71498	Canola	cytosol	9.78	72.64
CDX71497	Canola	plastid	6.86	52.94
GSMUA_Achr4P14200_001	Banana	cytosol	4.19	48.53
CDY58727	Canola	peroxisome	5.72	45.45
CDY60273	Canola	nucleus	35.32	38.72
Os03t0441000-01	Rice	nucleus	35.96	34.55
TraesCS4A01G163100.1	Wheat	nucleus	36.21	34.05
CDY03944	Canola	nucleus	36.72	34.0
KXG31790	Sorghum	nucleus	31.77	33.88
TraesCS4B01G150300.3	Wheat	nucleus	36.34	33.69
TraesCS4D01G160000.1	Wheat	nucleus	36.09	33.57
Os02t0654400-01	Rice	nucleus	31.0	33.52
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	35.96	32.57
OQU92338	Sorghum	nucleus	37.1	32.41
TraesCS6B01G281300.1	Wheat	nucleus	31.89	31.57
HORVU6Hr1G062340.1	Barley	nucleus	31.51	31.31
TraesCS6A01G242900.1	Wheat	nucleus	31.64	31.28
Zm00001d039729_P004	Maize	nucleus	30.62	31.18
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	32.02	30.07
Zm00001d029598_P003	Maize	nucleus	34.82	29.53
Zm00001d039731_P002	Maize	nucleus	15.12	22.62

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078GFI0	UniProt:A0A078GFI0	EnsemblPlants:CDY25235	ProteinID:CDY25235	ProteinID:CDY25235.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00029237001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14
InterPro:RST	InterPro:TAF4	UniParc:UPI0004EE82F9	SEG:seg	:	:

Description

BnaC02g30110DBnaC02g30110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFI0]

Coordinates

chrLK032171:+:331236..335926

Molecular Weight (calculated)

86764.9 Da

IEP (calculated)

9.562

GRAVY (calculated)

-0.951

Length

787 amino acids

Sequence
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSTNP PGNTHSPNQH FTATWKNDIG DASMNLQTQH SLDSTQMKDQ HGSALDGQHQ HDLKRANEPQ
101: DLHRPGQHWD NPPQVPQTSG LQISEKNPTG NEPERPHNQE SESQFLKLQK MSSQQARGME QPPVNPLNRN PKQVPFAALL PTLMAQLDKD RALQLRTLYS
201: RLKKNEIPKE GFTRHMKDIV GDQMLRLAVS KLQQVGYNQG KMGIQAPSTE INNQKSQSDP RGVVHLNQLS SSTSSSVPVQ GLTKHPPHQM QLPPSSFPMY
301: TSSGNIHSFN TNVSGSPLRP HLHDPHMRHV AHNQTMGSSG LGGPPQSTTN MMTMPKFERQ TSVNDPSRVQ GGATSHFQNS SSLPPGQGSS MSNVKQESVD
401: QSFEQKNAAS GASKEDLEKD SSRNMAHASS VSPSSITTQL DASTAMNSRG PLGTSQAGVN ARMPPKKPFV GQKKPLETSS SPPSKKQKLV PNSMDQSIEQ
501: LNDVTAVSGV NLREEEEQLF SGGKEDGRVS EASRRVVHEE EEKLILQKIP LQKKLAEIMA KVGLKQISND VERCLSLCVE ERMRGLLSHI IRLSKQRVDT
601: EKSRHRTVIT SDVRQQINEM NQKVKEEWEK KQAEAEKLKK PSESEEGDGG VDSEKEKEDN RSKGLKGNKE DDDKMRTTAA NVAARAAVGG DDTFLKWQLM
701: AEARQKSVSE SGKDGTQKAT SSGGRTSKDK QDSGRRFTGV GGRRLGKNQG SSLQPKVVRT ISAKDVVAVL EREPQMSKSI LMYRLLQ

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.