Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46486 | Canola | nucleus, plastid | 8.8 | 85.23 |
| Bra035961.1-P | Field mustard | nucleus | 75.35 | 82.41 |
| CDY25235 | Canola | nucleus | 75.59 | 81.83 |
| CDY22365 | Canola | nucleus | 72.65 | 79.97 |
| Bra033662.1-P | Field mustard | nucleus | 72.07 | 79.64 |
| CDY68956 | Canola | nucleus | 51.17 | 79.27 |
| CDY30789 | Canola | mitochondrion | 73.94 | 77.4 |
| AT1G27720.1 | Thale cress | nucleus | 41.78 | 49.44 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 3.87 | 48.53 |
| CDY58727 | Canola | peroxisome | 5.63 | 48.48 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 49.18 | 45.25 |
| KRH61389 | Soybean | nucleus | 44.72 | 41.64 |
| KRH15434 | Soybean | nucleus | 45.07 | 41.07 |
| KRH52077 | Soybean | nucleus | 44.84 | 40.94 |
| Solyc04g078050.2.1 | Tomato | nucleus | 43.54 | 39.72 |
| KRH05606 | Soybean | mitochondrion | 44.01 | 38.42 |
| Os03t0441000-01 | Rice | nucleus | 33.33 | 34.68 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 33.92 | 34.53 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 34.04 | 34.16 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 33.8 | 34.04 |
| KXG31790 | Sorghum | nucleus | 29.46 | 34.01 |
| Os02t0654400-01 | Rice | nucleus | 28.29 | 33.1 |
| OQU92338 | Sorghum | nucleus | 34.98 | 33.07 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 33.69 | 33.03 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 29.58 | 31.82 |
| Zm00001d039729_P004 | Maize | nucleus | 28.76 | 31.69 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 29.46 | 31.57 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 29.46 | 31.53 |
| Zm00001d029598_P003 | Maize | nucleus | 33.33 | 30.6 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 29.81 | 30.31 |
| PGSC0003DMT400055395 | Potato | nucleus | 18.31 | 26.62 |
| Zm00001d039731_P002 | Maize | nucleus | 14.2 | 23.0 |
Protein Annotations
| MapMan:15.3.5.3.4 | EntrezGene:834330 | ProteinID:AED94913.1 | ProteinID:AED94914.1 | EMBL:AK229454 | ArrayExpress:AT5G43130 |
| EnsemblPlantsGene:AT5G43130 | RefSeq:AT5G43130 | TAIR:AT5G43130 | RefSeq:AT5G43130-TAIR-G | EnsemblPlants:AT5G43130.2 | TAIR:AT5G43130.2 |
| EMBL:AY457044 | Unigene:At.30136 | ProteinID:BAB08277.1 | UniProt:F4K4L7 | GO:GO:0001075 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0045944 | GO:GO:0051123 |
| RefSeq:NP_001190458.1 | RefSeq:NP_199127.3 | PFAM:PF05236 | PFAM:PF12174 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF14 | InterPro:RST | InterPro:TAF4 |
| Symbol:TAF4 | UniParc:UPI0001E93109 | SEG:seg | : | : | : |
Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
Coordinates
chr5:-:17315461..17321185
Molecular Weight (calculated)
93746.0 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.890
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.