Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- endoplasmic reticulum 1
- cytosol 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g078050.2.1 | Tomato | nucleus | 82.08 | 51.5 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 4.44 | 38.24 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 34.98 | 22.14 |
| KRH52077 | Soybean | nucleus | 34.13 | 21.44 |
| KRH61389 | Soybean | nucleus | 33.28 | 21.31 |
| KRH15434 | Soybean | nucleus | 32.94 | 20.64 |
| KRH05606 | Soybean | mitochondrion | 33.28 | 19.98 |
| Bra035961.1-P | Field mustard | nucleus | 25.43 | 19.13 |
| Bra033662.1-P | Field mustard | nucleus | 24.74 | 18.81 |
| AT5G43130.2 | Thale cress | nucleus | 26.62 | 18.31 |
| Os03t0441000-01 | Rice | nucleus | 22.01 | 15.75 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 22.01 | 15.41 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 22.01 | 15.19 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 21.84 | 15.13 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 21.67 | 14.61 |
| OQU92338 | Sorghum | nucleus | 22.18 | 14.43 |
| AT1G27720.1 | Thale cress | nucleus | 16.55 | 13.47 |
| Zm00001d029598_P003 | Maize | nucleus | 21.33 | 13.47 |
| Zm00001d039731_P002 | Maize | nucleus | 11.77 | 13.12 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 16.21 | 11.83 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 15.19 | 11.2 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 14.85 | 10.98 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 14.68 | 10.8 |
| Zm00001d039729_P004 | Maize | nucleus | 13.99 | 10.61 |
| Os02t0654400-01 | Rice | nucleus | 13.14 | 10.58 |
| KXG31790 | Sorghum | nucleus | 12.97 | 10.3 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 14.68 | 10.26 |
| CDX71498 | Canola | cytosol | 1.54 | 8.49 |
| CDX71499 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055395 | EnsemblPlantsGene:PGSC0003DMG401021510 | InterPro:RST | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF14 | PFAM:PF12174 |
| PGSC:PGSC0003DMG401021510 | SEG:seg | UniParc:UPI000295C7B6 | UniProt:M1BXU4 | MapMan:15.3.5.3.4 | : |
Description
Transcription initiation factor [Source:PGSC_GENE;Acc:PGSC0003DMG401021510]
Coordinates
chr4:+:67227739..67232498
Molecular Weight (calculated)
64552.5 Da
IEP (calculated)
5.837
GRAVY (calculated)
-0.815
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIMKLLE EDEDETMHSG ADVEAFTAAL NRDIGGDNSQ SQPSDSDSVP LSQGSSYTSN QFAPWQTANH DENASCCSLQ DSETMQPKEE NLSDMQLKRL
101: DTDSQNQQQK NDSSQEINSL PLQHISQDSY HTTEVEQDTL HSSRAVSMQN PEKNTQNPES PHLNLQGVNN LQSMQSLTTG TSGLPRVATV ASNQSESATG
201: SSSQAAMNIA KQGKQVPFAM LFPHIQPQLD KDRAAQLQTL YVKLKKNEIS KESFVRNMRS IIGDQMLKMA VYKFQSQASK NSQSVPGQFP QSQASQQQHS
301: LMPADDSSNM AIESKAQKLH EVENQADLRG AQGSQMPSSG LTSVKQERDH TPFPIQGLNR QQQQHLHFSQ ASFPTFANAG NNYSAYSASN VNSSTTQPLK
401: QQSDDAQMRQ ISVQQNRNAT QFGVPTQAMG IMSAPKFEKQ NTFGEAKRLP GGGLNISSTS RIQQTSVQWQ PSANKEQKSI LSSPMTNPKP EPIDHFHDQL
501: HRSQLSPFSS VQVDQGNSTS ESSRDESIEQ TSRIGLSSTT SMKPSNSASS SMSSHMDTST LVIFLVCNFA SWLDLLTSQV RIYYRL
101: DTDSQNQQQK NDSSQEINSL PLQHISQDSY HTTEVEQDTL HSSRAVSMQN PEKNTQNPES PHLNLQGVNN LQSMQSLTTG TSGLPRVATV ASNQSESATG
201: SSSQAAMNIA KQGKQVPFAM LFPHIQPQLD KDRAAQLQTL YVKLKKNEIS KESFVRNMRS IIGDQMLKMA VYKFQSQASK NSQSVPGQFP QSQASQQQHS
301: LMPADDSSNM AIESKAQKLH EVENQADLRG AQGSQMPSSG LTSVKQERDH TPFPIQGLNR QQQQHLHFSQ ASFPTFANAG NNYSAYSASN VNSSTTQPLK
401: QQSDDAQMRQ ISVQQNRNAT QFGVPTQAMG IMSAPKFEKQ NTFGEAKRLP GGGLNISSTS RIQQTSVQWQ PSANKEQKSI LSSPMTNPKP EPIDHFHDQL
501: HRSQLSPFSS VQVDQGNSTS ESSRDESIEQ TSRIGLSSTT SMKPSNSASS SMSSHMDTST LVIFLVCNFA SWLDLLTSQV RIYYRL
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGESI LFNLFPLAKP MNKPINPP
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGESI LFNLFPLAKP MNKPINPP
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.