CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH06174
KRH15679
KRH19914
KRH24217
KRH29220
KRH30849
KRH32528
KRH32724
KRH47589
KRH52333
KRH61671
KRH62947
KRH75898

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	KRH06174	AT1G17440.1	17340043
AT1G27720.1	KRH47589	AT1G17440.1	17340043
AT1G27720.1	KRH24217	AT1G50300.1	17340043
AT1G27720.1	KRH29220	AT1G50300.1	17340043
AT1G27720.1	KRH62947	AT1G50300.1	17340043
AT1G27720.1	KRH75898	AT1G50300.1	17340043
AT1G27720.1	KRH30849	AT3G10070.1	17340043
AT1G27720.1	KRH32724	AT3G10070.1	17340043
AT1G27720.1	KRH19914	AT4G34340.1	17340043
AT1G27720.1	KRH32528	AT4G34340.1	17340043
AT1G27720.1	KRG99418	AT5G25150.1	17340043
AT1G27720.1	KRH05348	AT5G25150.1	17340043
AT1G27720.1	KRH15679	AT5G25150.1	17340043
AT1G27720.1	KRH52333	AT5G25150.1	17340043
AT1G27720.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61389	Soybean	nucleus	89.6	91.37
KRH15434	Soybean	nucleus	63.99	63.85
KRH05606	Soybean	mitochondrion	63.77	60.96
CDX71498	Canola	cytosol	6.75	59.43
CDX71499	Canola	nucleus	9.0	52.83
VIT_18s0001g09310.t01	Wine grape	nucleus	51.23	51.62
GSMUA_Achr4P14200_001	Banana	cytosol	3.54	48.53
Solyc04g078050.2.1	Tomato	nucleus	47.27	47.22
Bra035961.1-P	Field mustard	nucleus	39.23	46.98
Bra033662.1-P	Field mustard	nucleus	37.62	45.53
AT5G43130.2	Thale cress	nucleus	40.94	44.84
AT1G27720.1	Thale cress	nucleus	29.15	37.78
Os03t0441000-01	Rice	nucleus	33.12	37.73
KXG31790	Sorghum	nucleus	28.72	36.31
TraesCS4A01G163100.1	Wheat	nucleus	32.26	35.96
TraesCS4B01G150300.3	Wheat	nucleus	32.15	35.34
Os02t0654400-01	Rice	nucleus	27.55	35.3
TraesCS4D01G160000.1	Wheat	nucleus	31.94	35.22
OQU92338	Sorghum	nucleus	33.76	34.96
Zm00001d039729_P004	Maize	nucleus	28.4	34.28
PGSC0003DMT400055395	Potato	nucleus	21.44	34.13
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	31.73	34.06
HORVU6Hr1G062340.1	Barley	nucleus	28.3	33.33
TraesCS6A01G242900.1	Wheat	nucleus	28.19	33.04
Zm00001d029598_P003	Maize	nucleus	32.8	32.97
TraesCS6B01G281300.1	Wheat	nucleus	28.08	32.96
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	28.4	31.62
Bra030061.1-P	Field mustard	mitochondrion, nucleus	25.72	29.89
Zm00001d039731_P002	Maize	nucleus	14.26	25.29

Protein Annotations

EntrezGene:100797127	MapMan:15.3.5.3.4	EMBL:ACUP02003404	EnsemblPlantsGene:GLYMA_06G045200	GO:GO:0001075	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0045944	GO:GO:0051123	UniProt:I1K853	ProteinID:KRH52076.1
EnsemblPlants:KRH52077	ProteinID:KRH52077	ProteinID:KRH52077.1	ProteinID:KRH52078.1	PFAM:PF05236	PFAM:PF12174
PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST	InterPro:TAF4	UniParc:UPI0002339D34	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:3425933..3434985

Molecular Weight (calculated)

102194.0 Da

IEP (calculated)

8.116

GRAVY (calculated)

-0.959

Length

933 amino acids

Sequence
(BLAST)

001: MDPSIVKLLE DDEDESMHSG ADVEAFQAAL NRDIGGDTST SQLSGSDTGS NNSLSQSLPK QPTSTHDKQS DCQNQEPKVV QQQEQQHSSE MEQKPQQPLV
101: EQLQNAASQD ANNLPSSQKQ SQDESAQGHT AQAPHQNSQT NVTQNSEKDP VFNHEAVNTH NPNHESQYAK LQQMSNQQAT VKEQPGSQVD RNKQVPFAML
201: LPMLIPQLPK DRAMQLQTLF NKLKKDEMPK DQFVRLMKGI VGDQMLRLAL TKVQLQTRSN PAPTGQQHPH VRTPNVNSGA TKFNDPHALA HLHQRSMNAA
301: ADQSNNTSSA VQVKNEPTYP TMDINAKKSR ELDVQVESQG AQLNQLPSSS SNAVSQETER SSLHLQGLNK EQQQHLHFPS AYGNSGGNYN PFSGSTSSST
401: SSIRPQPFDS HMRQIPHQSI SPNQLGGSTQ GLIGLTKLDQ QNSFNDPKRM PGGFVSPVAN NTTSQQTSNS WQPSANKEQS SGSFSSVPYV KKEPNDLSTE
501: QQHRHNLSKL HGLHSVNSVQ NEQGSSANQG TLKEEFSRGF PASTSMPHTT SSLLPLNSAS PSVSQLDPSA TLSPQIPSNT SVINARTPLK KPSPGQKKPI
601: EALGSSPPPP SKKQKVSGAS LEPSIEQLND VTAVSGVDLR EEEEQLFSGP KEDSRASEAS RRVVQEEEES LILQKAPLQR KLIEIINECG LKGVSNDLER
701: CLSLCVEERM RGVISNVIRM SKQRVDLEKT SHRTVVTSDV RQQILTMNKK AREEWEKKQS ETEKLRKLND VDGNAGIDGD KEKDEGRTKA TKVNKEVDDK
801: MRTNAANVAA RAAVGGDDML SKWQLMAEQA RQKKRGGGMD ASSGSQPAKD VSQKSSSTSG RSTKDNQARE KKGPTSGAGR KFGRSHATTP QNSIARSISV
901: KDVIAVLERE PQMSKSSLLY RLYERIHSDT STE

Best Arabidopsis Sequence Match ( AT1G27720.9 )
(BLAST)

001: MFQDSLIRDI EEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI
101: SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS
201: SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE
301: QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS
401: SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL
501: CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG
601: GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE PQMSRSTLLY RVYNRICSDV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.