CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH02410
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH24348
KRH30849
KRH32528
KRH32724
KRH39697
KRH47589
KRH50675
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH73515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	KRH06174	AT1G17440.1	17340043
AT5G25150.1	KRH47589	AT1G17440.1	17340043
AT5G25150.1	KRH05606	AT1G27720.1	17340043
AT5G25150.1	KRH15434	AT1G27720.1	17340043
AT5G25150.1	KRH52077	AT1G27720.1	17340043
AT5G25150.1	KRH61389	AT1G27720.1	17340043
AT5G25150.1	KRH39697	AT1G32750.1	17340043
AT5G25150.1	KRH62676	AT1G32750.1	17340043
AT5G25150.1	KRH02410	AT1G54140.1	17340043
AT5G25150.1	KRH50675	AT1G54140.1	17340043
AT5G25150.1	KRH73515	AT1G54140.1	17340043
AT5G25150.1	KRH30849	AT3G10070.1	17340043
AT5G25150.1	KRH32724	AT3G10070.1	17340043
AT5G25150.1	KRH19914	AT4G34340.1	17340043
AT5G25150.1	KRH32528	AT4G34340.1	17340043
AT5G25150.1	KRG99418	AT5G25150.1	17340043
AT5G25150.1	KRH05348	AT5G25150.1	17340043
AT5G25150.1	KRH15679	AT5G25150.1	17340043
AT5G25150.1	KRH52333	AT5G25150.1	17340043
AT5G25150.1	KRH61671	AT5G25150.1	17340043
AT5G25150.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15679	Soybean	cytosol	60.92	41.73
GSMUA_Achr9P22400_001	Banana	cytosol	66.67	33.92
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	60.92	28.96
Zm00001d044810_P001	Maize	nucleus	37.93	25.58
Zm00001d016330_P001	Maize	extracellular	39.08	23.45
TraesCS7B01G416400.1	Wheat	nucleus	64.37	11.45
HORVU0Hr1G022460.1	Barley	nucleus	64.37	11.45
KRH52333	Soybean	nucleus	82.76	10.86
KRH61671	Soybean	nucleus	82.76	10.76
Zm00001d053142_P001	Maize	nucleus	18.39	9.94
KRH05348	Soybean	nucleus	70.11	9.27
VIT_04s0008g05780.t01	Wine grape	nucleus	71.26	9.17
Solyc06g065700.2.1	Tomato	nucleus	71.26	9.05
CDY19814	Canola	nucleus	68.97	8.98
Bra036534.1-P	Field mustard	nucleus	68.97	8.98
AT5G25150.1	Thale cress	nucleus	68.97	8.97
CDY05378	Canola	nucleus	67.82	8.89
Bra020485.1-P	Field mustard	nucleus	67.82	8.86
CDY05473	Canola	nucleus	67.82	8.86
CDX87098	Canola	nucleus	67.82	8.83
Os06t0649500-01	Rice	nucleus	65.52	8.72
TraesCS5A01G317800.1	Wheat	nucleus	64.37	8.54
TraesCS5B01G318400.1	Wheat	nucleus	64.37	8.54
TraesCS5D01G324200.2	Wheat	nucleus	64.37	8.54
TraesCS7A01G508300.2	Wheat	nucleus	64.37	8.54
HORVU7Hr1G113760.2	Barley	nucleus	64.37	8.54
TraesCS7D01G496500.1	Wheat	nucleus	63.22	8.45
KXG20501	Sorghum	nucleus	63.22	8.37
Zm00001d046810_P002	Maize	nucleus	63.22	8.17
GSMUA_Achr7P26980_001	Banana	nucleus	64.37	7.33
KRH04500	Soybean	cytosol	21.84	6.79
KRH04498	Soybean	mitochondrion	18.39	6.13
KRH67917	Soybean	cytosol	22.99	5.83
KRH02663	Soybean	cytosol, nucleus	19.54	5.3
KRH19247	Soybean	cytosol, endoplasmic reticulum	19.54	5.3
KRH61363	Soybean	nucleus	26.44	4.05
KRH28415	Soybean	nucleus	25.29	3.94
KRH52050	Soybean	cytosol, nucleus, peroxisome	26.44	3.6
KRH72083	Soybean	nucleus	20.69	3.16
KRH58014	Soybean	nucleus	21.84	3.04
KRH31616	Soybean	nucleus	19.54	2.98
KRG94333	Soybean	cytosol	6.9	2.97
KRH03286	Soybean	nucleus	26.44	2.62
KRG96051	Soybean	nucleus	27.59	2.54
KRH67774	Soybean	nucleus, plastid	26.44	2.44
KRH57076	Soybean	plasma membrane	13.79	1.42
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	6.9	1.34
KRH33352	Soybean	plastid	3.45	1.18
GSMUA_Achr9P22410_001	Banana	cytosol	1.15	0.27
KRH04503	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0FAS3	EMBL:ACUP02011053	EnsemblPlantsGene:GLYMA_18G143400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG99418
ProteinID:KRG99418	ProteinID:KRG99418.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0003DEC659	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr18:+:22900450..22901437

Molecular Weight (calculated)

9536.4 Da

IEP (calculated)

4.327

GRAVY (calculated)

0.259

Length

87 amino acids

Sequence
(BLAST)

1: MILSLAMSPG GFYMVSSDED GIIMMWDLSS SRCLTPLIGH TSCVWSLTFS YEVSIIAFGS ADCTVKLWDV NTSTKVSRAE ENPGRFS

Best Arabidopsis Sequence Match ( AT5G25150.2 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RVSYAFFTRI NSTIL

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.