CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX81826
CDX84083
CDX87098
CDY00904
CDY02479
CDY03944
CDY05378
CDY05473
CDY19814
CDY21749
CDY22214
CDY26139
CDY26245
CDY38963
CDY39435
CDY41320
CDY44660
CDY48302
CDY56625
CDY60164
CDY60273
CDY69783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	CDX81826	AT1G17440.1	17340043
AT5G25150.1	CDY21749	AT1G17440.1	17340043
AT5G25150.1	CDY26245	AT1G17440.1	17340043
AT5G25150.1	CDY48302	AT1G17440.1	17340043
AT5G25150.1	CDY03944	AT1G27720.1	17340043
AT5G25150.1	CDY60273	AT1G27720.1	17340043
AT5G25150.1	CDX84083	AT1G32750.1	17340043
AT5G25150.1	CDY44660	AT1G32750.1	17340043
AT5G25150.1	CDY02479	AT1G54140.1	17340043
AT5G25150.1	CDY26139	AT1G54140.1	17340043
AT5G25150.1	CDY56625	AT1G54140.1	17340043
AT5G25150.1	CDY00904	AT3G10070.1	17340043
AT5G25150.1	CDY22214	AT3G10070.1	17340043
AT5G25150.1	CDY41320	AT3G10070.1	17340043
AT5G25150.1	CDY60164	AT3G10070.1	17340043
AT5G25150.1	CDX75423	AT4G34340.1	17340043
AT5G25150.1	CDY69783	AT4G34340.1	17340043
AT5G25150.1	CDX87098	AT5G25150.1	17340043
AT5G25150.1	CDY05378	AT5G25150.1	17340043
AT5G25150.1	CDY05473	AT5G25150.1	17340043
AT5G25150.1	CDY19814	AT5G25150.1	17340043
AT5G25150.1	CDY38963	AT5G45600.1	17340043
AT5G25150.1	CDY39435	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036534.1-P	Field mustard	nucleus	98.2	98.2
CDY19814	Canola	nucleus	98.05	98.05
AT5G25150.1	Thale cress	nucleus	92.52	92.38
CDY05473	Canola	nucleus	91.02	91.29
CDY05378	Canola	nucleus	90.72	91.27
Zm00001d044810_P001	Maize	nucleus	16.17	83.72
GSMUA_Achr9P22400_001	Banana	cytosol	20.36	79.53
VIT_04s0008g05780.t01	Wine grape	nucleus	75.15	74.26
KRH52333	Soybean	nucleus	72.75	73.3
KRH61671	Soybean	nucleus	73.2	73.09
HORVU0Hr1G022460.1	Barley	nucleus	52.84	72.19
Zm00001d053142_P001	Maize	nucleus	17.37	72.05
TraesCS7B01G416400.1	Wheat	nucleus	51.95	70.96
KRH05348	Soybean	nucleus	69.61	70.67
Solyc06g065700.2.1	Tomato	nucleus	72.46	70.66
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	18.86	68.85
HORVU7Hr1G113760.2	Barley	nucleus	67.52	68.75
KXG20501	Sorghum	nucleus	67.52	68.65
TraesCS5D01G324200.2	Wheat	nucleus	67.37	68.6
TraesCS5B01G318400.1	Wheat	nucleus	67.22	68.45
TraesCS7D01G496500.1	Wheat	nucleus	66.17	67.9
KRG99418	Soybean	cytosol, extracellular, plastid	8.83	67.82
Zm00001d046810_P002	Maize	nucleus	67.37	66.86
Zm00001d016330_P001	Maize	extracellular	14.22	65.52
Os07t0205200-02	Rice	cytosol, nucleus	23.95	63.24
GSMUA_Achr9P22410_001	Banana	cytosol	33.68	60.32
GSMUA_Achr7P26980_001	Banana	nucleus	68.56	59.95
TraesCS7A01G467500.1	Wheat	nucleus	20.36	56.43
KRH15679	Soybean	cytosol	10.03	52.76
CDY43529	Canola	cytosol	13.47	28.04
CDX68590	Canola	cytosol	13.47	28.04
CDY03567	Canola	cytosol	13.17	27.41
CDY14200	Canola	cytosol	13.17	27.41
CDY11502	Canola	cytosol	10.78	20.81
CDX76728	Canola	cytosol	10.63	20.52
CDY57442	Canola	cytosol	6.59	20.0
CDY23845	Canola	nucleus	12.28	19.07
CDX79933	Canola	nucleus	12.13	18.88
CDY06918	Canola	cytosol, nucleus, peroxisome	12.43	17.11
CDY12836	Canola	extracellular, vacuole	2.1	16.47
CDY18648	Canola	cytosol	13.62	15.91
CDY41854	Canola	cytosol	12.72	15.62
CDY14776	Canola	mitochondrion	12.87	15.58
CDX81324	Canola	cytosol	13.62	14.82
CDX77335	Canola	cytosol	8.83	13.98
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	17.52	13.48
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	17.52	13.48
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	17.37	13.32
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	17.37	13.23
CDY22910	Canola	nucleus	17.07	12.24
CDY54973	Canola	nucleus	16.92	12.14
CDY12834	Canola	endoplasmic reticulum, extracellular	2.99	10.75
CDY40782	Canola	cytosol	1.65	9.73
CDY27109	Canola	cytosol	1.65	9.73
CDX92625	Canola	cytosol	1.65	9.73
CDY43370	Canola	cytosol	1.65	9.73
CDY72066	Canola	cytosol	1.65	9.73
CDY57444	Canola	cytosol, mitochondrion	4.19	9.66

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	GO:A0A078DIJ8	EnsemblPlants:CDX87098
ProteinID:CDX87098	ProteinID:CDX87098.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00145999001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264
InterPro:LisH	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897
SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI0004EF3CA7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC09g04130D

Coordinates

chrLK031849:-:462186..466869

Molecular Weight (calculated)

74558.8 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.467

Length

668 amino acids

Sequence
(BLAST)

001: MDPEQVDEFV MGYLKKKGFN SAAKQLQEAL HHNNGGTFNS TDYHNDPELT KLIRSFSQSE NDPTRYRDGY SKLRSWAYNS LDLYKHELLR VMYPVFIHCY
101: MDLVGKGHTQ EARSFFNSFR RDHEMIHLRD LQKLEGVLVP SHLEEMEFAR SLRQSKVNIK ICQYSYDLLL QYLHRTESTL MLGIINEHIN FQVYSGQPNS
201: SSDDIDAVTI VGSFQETADH VNQKEIQWGL LEDSLEDRLE KTGSLLSDSE KGQGESKDGD IDDSKKRSNE IGKQGSSLKK LKKDKAGNAT AKVARQETSI
301: VSPAPRVKPE LALPVMSTDV EESILEDLRN RVQLSSVAMP SVSFYTFVNT HNGLNCASIS HDGSLVAGGF SDSSIKVWDM AKIGQAGSGA LQDESDTNDQ
401: NVGPNSRRNY TLLLGHSGPV YSATFSPPGD FILSSSADTT IRLWSTKLNA NLVCYKGHNY PVWDVQFSPF GHYFASCSHD RTARIWSMDR IQPLRIMAGH
501: LSDVDCVQWH PNCNYIATGS SDKTVRLWDV QTGECVRIFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTARCITP LMGHNSCVWS LSYSGEGSLL
601: ASGSADCTVK LWDVTSSTKL TKAEEKNGNS NRLRSLRTFP TKSTPVHALR FSRRNLLFAA GALAKPAS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.