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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030901.1-P Field mustard nucleus 86.54 75.42
CDY02479 Canola nucleus 86.54 75.42
CDY56625 Canola nucleus 85.9 74.86
AT1G54140.1 Thale cress nucleus 84.62 72.13
VIT_09s0002g01160.t01 Wine grape cytosol 73.72 64.97
PGSC0003DMT400029923 Potato nucleus 75.0 63.93
KRH50675 Soybean cytosol 70.51 63.22
KRH02410 Soybean cytosol 69.87 61.58
Solyc04g010090.2.1 Tomato nucleus 61.54 59.63
GSMUA_Achr7P11400_001 Banana cytosol 58.33 57.23
KRH73515 Soybean cytosol 65.38 56.67
CDY33086 Canola plastid 40.38 54.31
TraesCS3B01G421800.1 Wheat cytosol, nucleus, plastid 55.77 54.04
HORVU3Hr1G091670.2 Barley cytosol, mitochondrion, nucleus 32.05 45.05
TraesCS3A01G387000.1 Wheat nucleus 51.92 44.51
TraesCS3B01G445300.1 Wheat nucleus 51.28 44.44
HORVU3Hr1G081440.3 Barley cytosol 32.05 43.86
TraesCS3D01G382100.1 Wheat cytosol, nucleus, plastid 60.9 43.38
Os03t0408500-01 Rice cytosol, mitochondrion, nucleus, plastid 62.18 43.3
TraesCS3B01G422000.1 Wheat cytosol, nucleus, plastid 59.62 42.47
TraesCS3B01G421600.1 Wheat cytosol, nucleus, plastid 59.62 42.27
EER94702 Sorghum cytosol, nucleus, plastid 61.54 42.11
TraesCS3A01G386800.1 Wheat cytosol 50.0 41.94
TraesCS3D01G382300.2 Wheat cytosol, nucleus, plastid 58.97 41.82
TraesCS3D01G406000.1 Wheat cytosol, nucleus, plastid 57.05 41.4
Zm00001d029473_P001 Maize plastid 59.62 41.33
TraesCS3D01G468500.1 Wheat cytosol, nucleus, plastid 58.97 41.07
TraesCS3B01G421700.1 Wheat cytosol, nucleus, plastid 58.97 40.71
TraesCS3D01G382200.1 Wheat nucleus 53.21 40.69
TraesCS3B01G516000.1 Wheat cytosol, nucleus, plastid 58.33 40.62
TraesCS3A01G472800.1 Wheat cytosol, nucleus, plastid 58.33 40.44
TraesCS3A01G386900.1 Wheat nucleus 37.18 40.28
HORVU3Hr1G100530.1 Barley cytosol 53.21 39.52
Zm00001d047265_P001 Maize plastid 60.26 37.6
TraesCS3B01G421900.1 Wheat cytosol, nucleus, plastid 43.59 37.57
Zm00001d007933_P001 Maize plastid 39.74 36.69
HORVU2Hr1G031760.1 Barley cytosol, nucleus 22.44 36.46
TraesCS3A01G387200.1 Wheat nucleus 25.64 33.9
GSMUA_Achr10P... Banana cytosol 52.56 20.65
Zm00001d008371_P001 Maize cytosol 32.05 20.0
HORVU3Hr1G081540.4 Barley plastid 28.21 18.11
Os07t0612500-00 Rice nucleus 32.69 12.0
Protein Annotations
Gene3D:1.10.20.10MapMan:15.3.4.3.3MapMan:15.3.5.3.9GO:A0A078GLM4UniProt:A0A078GLM4EnsemblPlants:CDY26139
ProteinID:CDY26139ProteinID:CDY26139.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0006139
GO:GO:0006352GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046982
EnsemblPlantsGene:GSBRNA2T00034789001InterPro:Histone-foldInterPro:IPR009072PFAM:PF02291PANTHER:PTHR12595PANTHER:PTHR12595:SF6
SUPFAM:SSF47113InterPro:TFIID-31UniParc:UPI0004EE9C50SEG:seg::
Description
BnaC06g10570DBnaC06g10570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLM4]
Coordinates
chrLK032185:+:520029..521170
Molecular Weight (calculated)
17430.7 Da
IEP (calculated)
4.256
GRAVY (calculated)
-0.402
Length
156 amino acids
Sequence
(BLAST)
001: MAGQGEEDVP RDAKIVKSLL KSMGVEDYEP RVVHQFLEIW YRYVVDVLTD AQVYSEHATK STIDCDDLKL AIQSKVSFSF PQPPLREVLL ELATSRNKIP
101: LPKLIAGLGV PLPPEQDTLL SPNYQLVIPK KSASIEPEET EEDDEDVTNP APQTSQ
Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.