Factsheet for HORVU3Hr1G100530.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU3Hr1G084430.4
HORVU7Hr1G113760.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT1G54140.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT1G54140.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	91.9	85.78
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	89.52	83.93
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	89.52	83.93
GSMUA_Achr7P11400_001	Banana	cytosol	55.24	72.96
EER94702	Sorghum	cytosol, nucleus, plastid	76.19	70.18
Zm00001d029473_P001	Maize	plastid	74.76	69.78
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	71.9	67.41
Solyc04g010090.2.1	Tomato	nucleus	48.57	63.35
Zm00001d047265_P001	Maize	plastid	74.76	62.8
HORVU3Hr1G081440.3	Barley	cytosol	32.86	60.53
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	31.43	59.46
VIT_09s0002g01160.t01	Wine grape	cytosol	48.57	57.63
PGSC0003DMT400029923	Potato	nucleus	49.52	56.83
CDY56625	Canola	nucleus	47.62	55.87
CDY02479	Canola	nucleus	46.67	54.75
Bra030901.1-P	Field mustard	nucleus	46.67	54.75
AT1G54140.1	Thale cress	nucleus	46.67	53.55
CDY26139	Canola	cytosol, nucleus, plastid	39.52	53.21
KRH50675	Soybean	cytosol	43.81	52.87
KRH02410	Soybean	cytosol	44.29	52.54
CDY33086	Canola	plastid	28.1	50.86
KRH73515	Soybean	cytosol	41.9	48.89
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	20.48	44.79
HORVU3Hr1G081540.4	Barley	plastid	47.14	40.74
GSMUA_Achr10P...	Banana	cytosol	46.19	24.43

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	UniProt:A0A287MHZ6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G100530	EnsemblPlants:HORVU3Hr1G100530.1	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	SUPFAM:SSF47113	InterPro:TFIID-31	UniParc:UPI000B4629F2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:663631978..663638141

Molecular Weight (calculated)

22247.0 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.657

Length

210 amino acids

Sequence
(BLAST)

001: MDGGGGGGGV RPAPIQPAAA GGGXLRSMGL GEGEYEPRVV HQFLDLAYRY AGDVLGDAQV YADHAGKPQL DADDVRLAIQ AKVNFSFSQP PPREVLLELA
101: RSRNKIPLPK SIAPPGSIPL PPEQDTLLSQ NYQLLPALKP PTQTEEAEDE EEGANADAAN PNPNSSQDQR GNEQQHQPQS QGQRVSFQLN AVAAAAAKRP
201: RMTIDQLNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.