Factsheet for HORVU3Hr1G084430.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU1Hr1G024140.1
HORVU2Hr1G031760.1
HORVU3Hr1G062710.1
HORVU3Hr1G081440.3
HORVU3Hr1G081540.4
HORVU3Hr1G085840.7
HORVU3Hr1G091670.2
HORVU3Hr1G100530.1
HORVU4Hr1G034590.13
HORVU6Hr1G032840.2
HORVU6Hr1G062340.1
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2
HORVU7Hr1G115120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	HORVU1Hr1G024140.1	AT1G02680.1	17340043
AT3G10070.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT3G10070.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT3G10070.1	HORVU4Hr1G034590.13	AT1G27720.1	17340043
AT3G10070.1	HORVU6Hr1G062340.1	AT1G27720.1	17340043
AT3G10070.1	HORVU7Hr1G115120.1	AT1G32750.1	17340043
AT3G10070.1	HORVU2Hr1G031760.1	AT1G54140.1	17340043
AT3G10070.1	HORVU3Hr1G081440.3	AT1G54140.1	17340043
AT3G10070.1	HORVU3Hr1G081540.4	AT1G54140.1	17340043
AT3G10070.1	HORVU3Hr1G091670.2	AT1G54140.1	17340043
AT3G10070.1	HORVU3Hr1G100530.1	AT1G54140.1	17340043
AT3G10070.1	HORVU3Hr1G062710.1	AT4G20280.1	17340043
AT3G10070.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT3G10070.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT3G10070.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G371300.1	Wheat	nucleus, plastid	89.91	88.45
TraesCS3B01G403500.1	Wheat	nucleus	87.52	87.2
TraesCS3D01G364400.1	Wheat	cytosol, plastid	85.32	85.01
Os01t0858500-01	Rice	plastid	34.13	61.79
EES03919	Sorghum	nucleus, plastid	54.5	59.64
Zm00001d042792_P002	Maize	nucleus, plastid	45.69	50.61
VIT_08s0007g03700.t01	Wine grape	nucleus	27.52	40.32
GSMUA_Achr10P...	Banana	plastid	23.67	36.24
CDY00904	Canola	nucleus, plastid	33.03	34.16
AT3G10070.1	Thale cress	nucleus, plastid	33.76	34.14
Bra029816.1-P	Field mustard	nucleus, plastid	32.66	33.78
CDY60164	Canola	nucleus, plastid	32.66	33.78
KRH30849	Soybean	nucleus, plastid	31.01	33.33
KRH32724	Soybean	nucleus, plastid	30.83	33.14
PGSC0003DMT400023148	Potato	nucleus, plastid	31.38	30.48
Bra034092.1-P	Field mustard	plastid	14.86	30.11
Solyc09g009680.2.1	Tomato	nucleus, plastid	31.19	30.04
CDY22214	Canola	plastid	17.98	28.74
CDY41320	Canola	plastid	17.25	27.25
HORVU6Hr1G032840.2	Barley	nucleus, plastid	18.9	24.58
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	24.59	23.47

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	UniProt:A0A287M0P2	ncoils:Coil	GO:GO:0000124
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G084430
EnsemblPlants:HORVU3Hr1G084430.4	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847	SUPFAM:SSF47113
InterPro:TFIID_TAF12_dom	UniParc:UPI000B47BA94	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:607676055..607680562

Molecular Weight (calculated)

57934.0 Da

IEP (calculated)

10.590

GRAVY (calculated)

-0.816

Length

545 amino acids

Sequence
(BLAST)

001: APTQPDASAP PPPPSTAAAA PPAAPSTNPA PPVSTAAQPT SDPTPAPAPV PAPAPAPAPA PAPAQTLEPP TPIPATARPP APRMRPPYTH LASPITMSSS
101: SSAAAAGPSS TTSAMARGGV AIGLPAHPRG AQTPMGYTGF VPPPPLAHQF SAMHRGPDQT PLPTPQLRQP APGIQNIGMI GSLNASQMRP GSISSSQQPR
201: PGLPSSATPS SSGSQMPGSQ KTPMHSLTRP MSMGSPAAAL QQTPANMSSP FRPQQRPQVP QQRPQVPQQR PQVPQPRPYH AAQSAPIASQ QNALSGQQQL
301: PQQQLLQQQP QHHQQQHQQQ QQQQQVLQQQ QQQQQQQQQQ QQQQQQQQQQ QQQSQPQSSS QQNTTLKNQQ QAARTPVSLT QKPDSPATLQ ATNMQLVDMA
401: SADAASGESS NRLLSKRSIH DLLAQIDPSE RLDPDVEDVL IDIAEDFIES VGTFACSLAK HRKSTTLEAK DVLLHAERSW NITLPGFTGD EIKLYKKPHV
501: NDIHRERLTL IKKSMASEGN IKTSAAQVTA NQKNQTPKPP ATGSP

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.