Factsheet for Bra029816.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra020485.1-P
Bra025975.1-P
Bra030061.1-P
Bra030508.1-P
Bra030901.1-P
Bra030989.1-P
Bra033338.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	Bra030508.1-P	AT1G02680.1	17340043
AT3G10070.1	Bra033338.1-P	AT1G02680.1	17340043
AT3G10070.1	Bra025975.1-P	AT1G17440.1	17340043
AT3G10070.1	Bra030989.1-P	AT1G17440.1	17340043
AT3G10070.1	Bra030061.1-P	AT1G27720.1	17340043
AT3G10070.1	Bra035499.1-P	AT1G32750.1	17340043
AT3G10070.1	Bra030901.1-P	AT1G54140.1	17340043
AT3G10070.1	Bra013452.1-P	AT4G20280.1	17340043
AT3G10070.1	Bra011521.1-P	AT4G34340.1	17340043
AT3G10070.1	Bra020485.1-P	AT5G25150.1	17340043
AT3G10070.1	Bra036534.1-P	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60164	Canola	nucleus, plastid	98.48	98.48
AT3G10070.1	Thale cress	nucleus, plastid	76.28	74.58
Bra034092.1-P	Field mustard	plastid	31.5	61.71
VIT_08s0007g03700.t01	Wine grape	nucleus	38.14	54.03
KRH30849	Soybean	nucleus, plastid	40.04	41.62
KRH32724	Soybean	nucleus, plastid	38.9	40.43
PGSC0003DMT400023148	Potato	nucleus, plastid	42.13	39.57
Os01t0858500-01	Rice	plastid	22.58	39.53
Solyc09g009680.2.1	Tomato	nucleus, plastid	41.75	38.87
GSMUA_Achr10P...	Banana	plastid	24.67	36.52
Zm00001d042792_P002	Maize	nucleus, plastid	30.93	33.13
HORVU3Hr1G084430.4	Barley	plastid	33.78	32.66
EES03919	Sorghum	nucleus, plastid	30.36	32.13
TraesCS3B01G403500.1	Wheat	nucleus	33.21	31.99
TraesCS3D01G364400.1	Wheat	cytosol, plastid	33.02	31.81
TraesCS3A01G371300.1	Wheat	nucleus, plastid	32.83	31.23
Bra025975.1-P	Field mustard	plastid	25.05	20.4
Bra030989.1-P	Field mustard	plastid	20.87	18.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EnsemblPlantsGene:Bra029816	EnsemblPlants:Bra029816.1	EnsemblPlants:Bra029816.1-P
GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4ELZ6	PFAM:PD012998	PFAM:PF03847	PRINTS:PR01217
PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002547A3D	SEG:seg

Description

AT3G10070 (E=4e-144) TAF12, TAFII58 | TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor

Coordinates

chrA05:+:22165217..22167940

Molecular Weight (calculated)

55643.7 Da

IEP (calculated)

10.359

GRAVY (calculated)

-0.802

Length

527 amino acids

Sequence
(BLAST)

001: MEQPRQTSTA SQPPETPSQP SEPAPKPAVL SQIQQPPSTN PNPSSASSIT SSPAPPSPSL NPNPNPPQYT RPVTSPATQH LPQSLSRPPP PSYSRPWQPH
101: SSYGHFSSSA SSSPLLSSSS APASSSSSSL PVAGQQRGGM AIGVPASPIP SPSPTPSQPP ASAFPGSFGQ QYGGLGRGSV GMSEASSNSS VPQGRMMQGT
201: QGMGMMGTIG SGSQMRPSGM TQHQQRPAQS SLRPASSPSS PSPVPQNFQG HSLMRPSAIG SPGVQSTGAA NQPWLSSSAQ GKPPLAPPSY RPQVTNPSMP
301: QRSHVPQHHP STSPAASQPQ QQQHQLQPQE QHQQLRSPHQ PLPYSHQPPR VQGSVNQKAA SLAMPNQPPV TQPGNQAKTV SAENEESDDR ILGKRSIHEI
401: LQQIDPSEKL DPEVEGILAD IAEDFVESIT TFGCSLAKHR KSDTLEAKDI LLHVERNWNI RPPGFSSDEI KTFRKPVTTD IHKDRLAAVK KSMTVTEAAN
501: ARFGTANARG GQAKTPANPL ASTTFNH

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.