Factsheet for Bra030508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030989.1-P
Bra034092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G02680.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G02680.1	Bra029816.1-P	AT3G10070.1	17340043
AT1G02680.1	Bra034092.1-P	AT3G10070.1	17340043
AT1G02680.1	Bra013452.1-P	AT4G20280.1	17340043
AT1G02680.1	Bra011521.1-P	AT4G34340.1	17340043
AT1G02680.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15437	Canola	plastid	99.22	99.22
Bra033338.1-P	Field mustard	nucleus, plastid	94.53	94.53
AT1G02680.1	Thale cress	plastid	88.28	89.68
PGSC0003DMT400076353	Potato	nucleus	64.06	64.06
Solyc02g078300.2.1	Tomato	nucleus	64.06	64.06
KRH31641	Soybean	nucleus, plastid	52.34	63.81
Zm00001d040759_P002	Maize	cytosol	11.72	62.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	60.94	60.47
KRH31624	Soybean	nucleus, plastid	64.06	60.29
KRH31820	Soybean	nucleus, plastid	63.28	59.56
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	65.62	57.53
Os01t0338100-00	Rice	plastid	59.38	46.63
Zm00001d040757_P002	Maize	plastid	61.72	42.7
EES00711	Sorghum	plastid	61.72	42.25
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	39.84	39.53
TraesCS5D01G143700.1	Wheat	plastid	57.81	36.82
TraesCS1D01G111100.1	Wheat	plastid	59.38	36.72
HORVU1Hr1G024140.1	Barley	plastid	59.38	36.36
TraesCS5A01G149100.1	Wheat	plastid	58.59	36.23
TraesCS1A01G107900.2	Wheat	nucleus, plastid	60.16	34.38
TraesCS1B01G130100.1	Wheat	plastid	58.59	32.19

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EnsemblPlantsGene:Bra030508	EnsemblPlants:Bra030508.1	EnsemblPlants:Bra030508.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4ENY8	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	SUPFAM:SSF47113
InterPro:TFIID_TAF13	UniParc:UPI0002545C86	SEG:seg	:	:	:

Description

AT1G02680 (E=7e-051) TAF13 | TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor

Coordinates

chrA08:-:21520513..21521352

Molecular Weight (calculated)

14354.2 Da

IEP (calculated)

5.806

GRAVY (calculated)

-0.522

Length

128 amino acids

Sequence
(BLAST)

001: MSNTAAAAAA SSSKSKAAGS SQAPEKRKPL FQKELQHMMY GFGDEQNPLP ETVALVEDIV VEYVTDLTHK AQEIGTKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EDKITSLD

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.