Factsheet for VIT_07s0005g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00960.t01
VIT_03s0038g04360.t01
VIT_08s0007g03700.t01
VIT_08s0040g01420.t01
VIT_09s0002g01420.t01
VIT_19s0093g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT1G02680.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT1G02680.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043
AT1G02680.1	VIT_19s0093g00470.t01	AT4G20280.1	17340043
AT1G02680.1	VIT_08s0040g01420.t01	AT4G34340.1	17340043
AT1G02680.1	VIT_03s0038g00960.t01	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078300.2.1	Tomato	nucleus	73.97	84.38
PGSC0003DMT400076353	Potato	nucleus	73.97	84.38
Zm00001d040759_P002	Maize	cytosol	13.7	83.33
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	69.18	78.29
KRH31641	Soybean	nucleus, plastid	55.48	77.14
KRH31624	Soybean	nucleus, plastid	68.49	73.53
KRH31820	Soybean	nucleus, plastid	67.81	72.79
AT1G02680.1	Thale cress	plastid	57.53	66.67
CDY15437	Canola	plastid	58.22	66.41
Bra033338.1-P	Field mustard	nucleus, plastid	57.53	65.62
Bra030508.1-P	Field mustard	plastid	57.53	65.62
CDY15256	Canola	nucleus, plastid	57.53	65.12
Os01t0338100-00	Rice	plastid	63.7	57.06
Zm00001d040757_P002	Maize	plastid	65.75	51.89
EES00711	Sorghum	plastid	65.07	50.8
CDX89953	Canola	nucleus, plastid	57.53	50.0
CDY71056	Canola	mitochondrion, plastid	57.53	50.0
TraesCS1D01G111100.1	Wheat	plastid	65.75	46.38
TraesCS5D01G143700.1	Wheat	plastid	63.7	46.27
HORVU1Hr1G024140.1	Barley	plastid	65.75	45.93
TraesCS5A01G149100.1	Wheat	plastid	64.38	45.41
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	39.04	44.19
TraesCS1A01G107900.2	Wheat	nucleus, plastid	65.75	42.86
TraesCS1B01G130100.1	Wheat	plastid	65.75	41.2

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100246965	wikigene:100246965	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	ProteinID:CBI36929
ProteinID:CBI36929.3	ncoils:Coil	UniProt:D7U2G3	EMBL:FN596502	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006357	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009960	GO:GO:0009987	GO:GO:0046982
GO:GO:0048316	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100246965	wikigene:LOC100246965	PFAM:PF02269
PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	SUPFAM:SSF47113	InterPro:TFIID_TAF13	UniParc:UPI0001BE4623	ArrayExpress:VIT_07s0005g01230
EnsemblPlantsGene:VIT_07s0005g01230	EnsemblPlants:VIT_07s0005g01230.t01	RefSeq:XP_002275286	RefSeq:XP_002275286.1	RefSeq:XP_002275335	RefSeq:XP_002275335.1
RefSeq:XP_002275358	RefSeq:XP_002275358.1	RefSeq:XP_003632408	RefSeq:XP_003632408.1	RefSeq:XP_003632409	RefSeq:XP_003632409.1

Description

No Description!

Coordinates

chr7:-:3757739..3761239

Molecular Weight (calculated)

16316.4 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.547

Length

146 amino acids

Sequence
(BLAST)

001: MNSSSAGPSS KPRAGSSQPS DSSFKRKRGV FQKDLQHMMY GFGDDANTSW TALLSAGFLS KQSSHPLPET VALLEDIVVE YVTDLVHKAQ ETASKRGKLL
101: TEDFLFLMRK DLPKLNRCTE LLSMNEELKQ ARKAFDVDEE KLATME

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.