Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15437 | Canola | plastid | 93.02 | 93.75 |
| AT1G02680.1 | Thale cress | plastid | 84.5 | 86.51 |
| CDX89953 | Canola | nucleus, plastid | 93.02 | 71.43 |
| CDY71056 | Canola | mitochondrion, plastid | 92.25 | 70.83 |
| Zm00001d040759_P002 | Maize | cytosol | 12.4 | 66.67 |
| PGSC0003DMT400076353 | Potato | nucleus | 64.34 | 64.84 |
| Solyc02g078300.2.1 | Tomato | nucleus | 64.34 | 64.84 |
| KRH31641 | Soybean | nucleus, plastid | 50.39 | 61.9 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 60.47 | 60.47 |
| KRH31624 | Soybean | nucleus, plastid | 62.79 | 59.56 |
| KRH31820 | Soybean | nucleus, plastid | 62.02 | 58.82 |
| VIT_07s0005g01230.t01 | Wine grape | nucleus, plastid | 65.12 | 57.53 |
| Os01t0338100-00 | Rice | plastid | 59.69 | 47.24 |
| Zm00001d040757_P002 | Maize | plastid | 60.47 | 42.16 |
| EES00711 | Sorghum | plastid | 60.47 | 41.71 |
| Solyc06g036200.1.1 | Tomato | endoplasmic reticulum | 40.31 | 40.31 |
| TraesCS5D01G143700.1 | Wheat | plastid | 57.36 | 36.82 |
| TraesCS1D01G111100.1 | Wheat | plastid | 58.91 | 36.72 |
| HORVU1Hr1G024140.1 | Barley | plastid | 58.91 | 36.36 |
| TraesCS5A01G149100.1 | Wheat | plastid | 58.14 | 36.23 |
| TraesCS1A01G107900.2 | Wheat | nucleus, plastid | 58.91 | 33.93 |
| TraesCS1B01G130100.1 | Wheat | plastid | 58.14 | 32.19 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.4.5 | MapMan:15.3.5.3.13 | GO:A0A078FQ38 | UniProt:A0A078FQ38 | EnsemblPlants:CDY15256 |
| ProteinID:CDY15256 | ProteinID:CDY15256.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00085456001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF02269 | PANTHER:PTHR11380 |
| PANTHER:PTHR11380:SF5 | SUPFAM:SSF47113 | InterPro:TFIID_TAF13 | UniParc:UPI0004EDF323 | SEG:seg | : |
Description
BnaC05g01350DBnaC05g01350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ38]
Coordinates
chrLK032052:+:720418..721676
Molecular Weight (calculated)
14470.3 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.582
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTPGATAA SSSSKSKATG GSQAPEKRKP LFQKELQHMM YGFGDEQNPL PETVALVEDI VVEYVTDLTH KAQEIGTKRG RLLVDDFLYL IRKDLPKLNR
101: CRELLAMQEE LKQARKAFDV DEEKITSLD
101: CRELLAMQEE LKQARKAFDV DEEKITSLD
001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD
101: RELLAMQEEL KQARKAFDVD EKELVD
Arabidopsis Description
TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.