Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G111100.1 | Wheat | plastid | 90.18 | 97.58 |
| HORVU1Hr1G024140.1 | Barley | plastid | 87.95 | 94.26 |
| TraesCS1B01G130100.1 | Wheat | plastid | 90.62 | 87.12 |
| TraesCS5A01G149100.1 | Wheat | plastid | 79.91 | 86.47 |
| Zm00001d040759_P002 | Maize | cytosol | 8.93 | 83.33 |
| Os01t0338100-00 | Rice | plastid | 55.36 | 76.07 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 43.3 | 75.19 |
| Solyc02g078300.2.1 | Tomato | nucleus | 40.62 | 71.09 |
| PGSC0003DMT400076353 | Potato | nucleus | 40.62 | 71.09 |
| KRH31641 | Soybean | nucleus, plastid | 32.14 | 68.57 |
| Zm00001d040757_P002 | Maize | plastid | 56.25 | 68.11 |
| EES00711 | Sorghum | plastid | 56.7 | 67.91 |
| KRH31624 | Soybean | nucleus, plastid | 40.18 | 66.18 |
| VIT_07s0005g01230.t01 | Wine grape | nucleus, plastid | 42.86 | 65.75 |
| KRH31820 | Soybean | nucleus, plastid | 39.73 | 65.44 |
| AT1G02680.1 | Thale cress | plastid | 35.27 | 62.7 |
| CDY15437 | Canola | plastid | 34.82 | 60.94 |
| Bra033338.1-P | Field mustard | nucleus, plastid | 34.38 | 60.16 |
| Bra030508.1-P | Field mustard | plastid | 34.38 | 60.16 |
| CDY15256 | Canola | nucleus, plastid | 33.93 | 58.91 |
| CDY71056 | Canola | mitochondrion, plastid | 37.05 | 49.4 |
| CDX89953 | Canola | nucleus, plastid | 35.71 | 47.62 |
| Solyc06g036200.1.1 | Tomato | endoplasmic reticulum | 23.21 | 40.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.4.5 | MapMan:15.3.5.3.13 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF02269 | PANTHER:PTHR11380 | PANTHER:PTHR11380:SF5 |
| SUPFAM:SSF47113 | InterPro:TFIID_TAF13 | EnsemblPlantsGene:TraesCS1A01G107900 | EnsemblPlants:TraesCS1A01G107900.2 | TIGR:cd07978 | SEG:seg |
Description
No Description!
Coordinates
chr1A:+:107094016..107096184
Molecular Weight (calculated)
23442.4 Da
IEP (calculated)
9.921
GRAVY (calculated)
-0.504
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNPSSNHPA PPAAAAGKSK SSGQAAAAAS GQGHQPSPAT PAAAKSKSSA AAGASGHGHN SSPATPAAGK SKASAHAAAP GQASSSNQPH AVGGADAAAS
101: SLKRKRGVFQ KDLQHMMYGF GDDPNPLPET VALVEDIVVE YVTDLSSLWF HSRVNPWCAF SQVHKAQNVA SKRGKLLTED FLYLIRKDMR KLHRATELLS
201: MNEELKQARK AFDVNEETLV VTNE
101: SLKRKRGVFQ KDLQHMMYGF GDDPNPLPET VALVEDIVVE YVTDLSSLWF HSRVNPWCAF SQVHKAQNVA SKRGKLLTED FLYLIRKDMR KLHRATELLS
201: MNEELKQARK AFDVNEETLV VTNE
001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD
101: RELLAMQEEL KQARKAFDVD EKELVD
Arabidopsis Description
TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.