Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G267500.1 | Wheat | nucleus | 96.3 | 96.3 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 95.83 | 95.83 |
| Os01t0680400-01 | Rice | nucleus | 73.61 | 75.36 |
| EES01269 | Sorghum | nucleus | 71.3 | 73.68 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 61.11 | 66.33 |
| Solyc05g010570.2.1 | Tomato | nucleus | 51.39 | 65.29 |
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 57.41 | 62.63 |
| Solyc05g018120.1.1 | Tomato | nucleus | 59.72 | 61.43 |
| PGSC0003DMT400050569 | Potato | nucleus | 59.72 | 61.43 |
| KRH64870 | Soybean | nucleus | 57.41 | 61.39 |
| CDX78982 | Canola | nucleus | 55.09 | 58.62 |
| Bra013452.1-P | Field mustard | nucleus | 54.63 | 58.13 |
| AT4G20280.1 | Thale cress | nucleus | 52.78 | 54.29 |
| Zm00001d011605_P001 | Maize | nucleus | 68.52 | 54.01 |
| CDY67613 | Canola | nucleus | 52.78 | 49.78 |
| CDY31444 | Canola | nucleus | 32.87 | 44.38 |
| AT1G20000.1 | Thale cress | nucleus, plastid | 41.2 | 43.63 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.11 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006367 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF04719 | PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 | SUPFAM:SSF47113 | InterPro:TAFII28 | EnsemblPlantsGene:TraesCS3A01G267300 |
| EnsemblPlants:TraesCS3A01G267300.1 | TIGR:cd08048 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:-:492196140..492202069
Molecular Weight (calculated)
23554.8 Da
IEP (calculated)
5.830
GRAVY (calculated)
-0.765
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDPFEAAVE EQESPPDSPA PPEEDPATAV PHTTAEDYDG SAGAGGSRAP PPRPRPSAPA APSTSVAPAA AKAKVRAHKE QDDDDDEEDP MEVDLDKLPS
101: GTSDPDKLAK MNALLSQFTE DQMNRYESFR RSGFQKSNMK KLLASITGSQ KISMPTTIVV SGIAKMFVGE VIETARIVMS ERKDSGPIRP CHIREAYRRL
201: KLEGKIPKRS VPRLFR
101: GTSDPDKLAK MNALLSQFTE DQMNRYESFR RSGFQKSNMK KLLASITGSQ KISMPTTIVV SGIAKMFVGE VIETARIVMS ERKDSGPIRP CHIREAYRRL
201: KLEGKIPKRS VPRLFR
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.