Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G364400.1 | Wheat | cytosol, plastid | 90.61 | 91.77 |
| TraesCS3B01G403500.1 | Wheat | nucleus | 89.53 | 90.68 |
| HORVU3Hr1G084430.4 | Barley | plastid | 88.45 | 89.91 |
| Os01t0858500-01 | Rice | plastid | 33.03 | 60.8 |
| EES03919 | Sorghum | nucleus, plastid | 53.61 | 59.64 |
| Zm00001d042792_P002 | Maize | nucleus, plastid | 44.58 | 50.2 |
| VIT_08s0007g03700.t01 | Wine grape | nucleus | 27.08 | 40.32 |
| GSMUA_Achr10P... | Banana | plastid | 23.65 | 36.8 |
| KRH30849 | Soybean | nucleus, plastid | 31.41 | 34.32 |
| KRH32724 | Soybean | nucleus, plastid | 31.23 | 34.12 |
| CDY60164 | Canola | nucleus, plastid | 31.23 | 32.83 |
| CDY00904 | Canola | nucleus, plastid | 31.23 | 32.83 |
| Bra029816.1-P | Field mustard | nucleus, plastid | 31.23 | 32.83 |
| AT3G10070.1 | Thale cress | nucleus, plastid | 31.59 | 32.47 |
| PGSC0003DMT400023148 | Potato | nucleus, plastid | 31.41 | 31.02 |
| Solyc09g009680.2.1 | Tomato | nucleus, plastid | 31.41 | 30.74 |
| Bra034092.1-P | Field mustard | plastid | 14.08 | 29.0 |
| CDY22214 | Canola | plastid | 17.51 | 28.45 |
| CDY41320 | Canola | plastid | 17.69 | 28.41 |
| TraesCS3A01G362900.1 | Wheat | nucleus, plastid | 24.55 | 24.95 |
| TraesCS6A01G161300.1 | Wheat | nucleus, plastid | 15.52 | 20.48 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.5 | MapMan:15.3.5.3.12 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PD012998 | PFAM:PF03847 |
| SUPFAM:SSF47113 | InterPro:TFIID_TAF12_dom | EnsemblPlantsGene:TraesCS3A01G371300 | EnsemblPlants:TraesCS3A01G371300.1 | TIGR:cd07981 | SEG:seg |
Description
No Description!
Coordinates
chr3A:-:621631461..621636219
Molecular Weight (calculated)
58579.8 Da
IEP (calculated)
10.493
GRAVY (calculated)
-0.784
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPPPTQPD AAAPPPSTAA AAPPAAPPPN PAPPVSTAAP PTSEPTPAPA PAPAPAPAPA PAPAPAPAQT LDPPTPIPAT ARPPAPRMRP PYTHLASPIT
101: MSSSSSAAAA GASSAASAMA RGGVAIGLPA HPRGAQTPMG YTGFVPPPPL AHQFSPMHRG PDQAPLATPQ LRQPAPGIQN IGMIGSLNAS QMRPGAVSGS
201: QQPRPGLPSS ATPSSSGSQM PGSQKTPMHS LTRPMSMGSP ATALQQTPAN MSSAFRPQQR PQVPQQRPQV PQPRPQVPQP RPYHAAQSAP VASQQNALSG
301: QQQLPQQQPQ HQHQQQQQQV LQQQQVLQQQ QQQQQQVLQQ QQQQQQQQQQ QQQQQQQQQS QPQSSSQQNQ QNTTLKNQQQ AARTPVSLTQ KPDSPATLQA
401: TNMQLVDMAS ADAASGESSN RLLSKRSIHD LLAQIDPSER LDPDVEDVLI DIAEDFIESV GTFACSLAKH RKSTTLEAKD VLLHAERSWN ITLPGFTGDE
501: IKLYKKPHVN DIHRERLTLI KKSMASEGNI KTSAAQSTAN QKNQAPKPPA TGSP
101: MSSSSSAAAA GASSAASAMA RGGVAIGLPA HPRGAQTPMG YTGFVPPPPL AHQFSPMHRG PDQAPLATPQ LRQPAPGIQN IGMIGSLNAS QMRPGAVSGS
201: QQPRPGLPSS ATPSSSGSQM PGSQKTPMHS LTRPMSMGSP ATALQQTPAN MSSAFRPQQR PQVPQQRPQV PQPRPQVPQP RPYHAAQSAP VASQQNALSG
301: QQQLPQQQPQ HQHQQQQQQV LQQQQVLQQQ QQQQQQVLQQ QQQQQQQQQQ QQQQQQQQQS QPQSSSQQNQ QNTTLKNQQQ AARTPVSLTQ KPDSPATLQA
401: TNMQLVDMAS ADAASGESSN RLLSKRSIHD LLAQIDPSER LDPDVEDVLI DIAEDFIESV GTFACSLAKH RKSTTLEAKD VLLHAERSWN ITLPGFTGDE
501: IKLYKKPHVN DIHRERLTLI KKSMASEGNI KTSAAQSTAN QKNQAPKPPA TGSP
001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH
Arabidopsis Description
TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.