Factsheet for TraesCS3A01G472800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G371300.1
TraesCS3B01G403500.1
TraesCS3D01G364400.1
TraesCS5B01G318400.1
TraesCS5D01G324200.2
TraesCS7A01G467500.1
TraesCS7B01G416400.1
TraesCS7D01G496500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	TraesCS3A01G371300.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3B01G403500.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3D01G364400.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS5B01G318400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS5D01G324200.2	AT5G25150.1	17340043
AT1G54140.1	TraesCS7A01G467500.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7B01G416400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7D01G496500.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	96.89	97.32
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	96.44	96.88
HORVU3Hr1G100530.1	Barley	cytosol	85.78	91.9
TraesCS3A01G387000.1	Wheat	nucleus	72.44	89.56
TraesCS3A01G386900.1	Wheat	nucleus	56.44	88.19
TraesCS3A01G386800.1	Wheat	cytosol	71.11	86.02
TraesCS3A01G387200.1	Wheat	nucleus	41.33	78.81
EER94702	Sorghum	cytosol, nucleus, plastid	79.56	78.51
Zm00001d029473_P001	Maize	plastid	77.78	77.78
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	72.89	73.21
GSMUA_Achr7P11400_001	Banana	cytosol	51.11	72.33
Zm00001d047265_P001	Maize	plastid	77.78	70.0
VIT_09s0002g01160.t01	Wine grape	cytosol	49.33	62.71
Solyc04g010090.2.1	Tomato	nucleus	44.0	61.49
PGSC0003DMT400029923	Potato	nucleus	48.89	60.11
Bra030901.1-P	Field mustard	nucleus	47.56	59.78
CDY56625	Canola	nucleus	47.56	59.78
CDY02479	Canola	nucleus	47.56	59.78
CDY26139	Canola	cytosol, nucleus, plastid	40.44	58.33
AT1G54140.1	Thale cress	nucleus	46.67	57.38
KRH02410	Soybean	cytosol	44.44	56.5
KRH50675	Soybean	cytosol	43.56	56.32
KRH73515	Soybean	cytosol	41.78	52.22
CDY33086	Canola	plastid	26.22	50.86
GSMUA_Achr10P...	Banana	cytosol	44.44	25.19

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	InterPro:TFIID-31	EnsemblPlantsGene:TraesCS3A01G472800	EnsemblPlants:TraesCS3A01G472800.1	TIGR:cd07979	SEG:seg

Description

No Description!

Coordinates

chr3A:+:703898034..703902217

Molecular Weight (calculated)

23979.9 Da

IEP (calculated)

4.530

GRAVY (calculated)

-0.704

Length

225 amino acids

Sequence
(BLAST)

001: MDGGGGGGGR PALQPAAAGG GASGPDEPRD ARVVRELLRS MGLGEGEYEP RVVHQFLDLA YRYAGDVLGD AQVYADHAGK PQLDADDVRL AIQAKVNFSF
101: SQPPPREVLL ELARSRNKIP LPKSIAPPGS IPLPPEQDTL LSQNYQLLPA LKPPTQTEEA EDEEEGANAD AANANPNSSQ DQRGNEQQQQ PQSQSQGQRV
201: SFQLNAVAAA AAKRPRMTID QLNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.