Factsheet for TraesCS3D01G468500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G371300.1
TraesCS3B01G403500.1
TraesCS3D01G364400.1
TraesCS5B01G318400.1
TraesCS5D01G324200.2
TraesCS7A01G467500.1
TraesCS7B01G416400.1
TraesCS7D01G496500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	TraesCS3A01G371300.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3B01G403500.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3D01G364400.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS5B01G318400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS5D01G324200.2	AT5G25150.1	17340043
AT1G54140.1	TraesCS7A01G467500.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7B01G416400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7D01G496500.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	96.88	96.44
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	96.43	96.43
HORVU3Hr1G100530.1	Barley	cytosol	83.93	89.52
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	84.38	86.3
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	83.48	85.0
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	81.25	84.65
TraesCS3D01G382200.1	Wheat	nucleus	75.45	82.84
EER94702	Sorghum	cytosol, nucleus, plastid	79.02	77.63
Zm00001d029473_P001	Maize	plastid	77.23	76.89
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	74.11	74.11
GSMUA_Achr7P11400_001	Banana	cytosol	51.79	72.96
Zm00001d047265_P001	Maize	plastid	77.68	69.6
VIT_09s0002g01160.t01	Wine grape	cytosol	50.0	63.28
Solyc04g010090.2.1	Tomato	nucleus	45.09	62.73
PGSC0003DMT400029923	Potato	nucleus	50.0	61.2
Bra030901.1-P	Field mustard	nucleus	48.21	60.34
CDY02479	Canola	nucleus	48.21	60.34
CDY56625	Canola	nucleus	47.77	59.78
CDY26139	Canola	cytosol, nucleus, plastid	41.07	58.97
AT1G54140.1	Thale cress	nucleus	47.32	57.92
KRH02410	Soybean	cytosol	45.54	57.63
KRH50675	Soybean	cytosol	44.64	57.47
KRH73515	Soybean	cytosol	41.96	52.22
CDY33086	Canola	plastid	26.34	50.86
GSMUA_Achr10P...	Banana	cytosol	44.2	24.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	InterPro:TFIID-31	EnsemblPlantsGene:TraesCS3D01G468500	EnsemblPlants:TraesCS3D01G468500.1	TIGR:cd07979	SEG:seg

Description

No Description!

Coordinates

chr3D:-:570803862..570806999

Molecular Weight (calculated)

23994.0 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.676

Length

224 amino acids

Sequence
(BLAST)

001: MDGGGGVRPS LQPAAAGGGA SGSPDEPRDA RVVRELLRSM GLGEGEYEPR VVHQFLDLAY RYAGDVLGDA QVYADHAGKP QLDADDVRLA IQAKVNFSFS
101: QPPPREVLLE LARSRNKIPL PKSIAPPGSI PLPPEQDTLL SQNYQLLPAL KPPTQTEEAE DDEEGANADA ANPNPNSLQD QTGNEQQQQP QSQSQGQRVS
201: FQLNAVAAAA AKRPRMTIDQ LNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.