Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030901.1-P | Field mustard | nucleus | 91.62 | 91.62 |
| CDY02479 | Canola | nucleus | 91.62 | 91.62 |
| AT1G54140.1 | Thale cress | nucleus | 90.5 | 88.52 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 74.86 | 85.9 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 74.86 | 75.71 |
| PGSC0003DMT400029923 | Potato | nucleus | 74.3 | 72.68 |
| KRH50675 | Soybean | cytosol | 68.16 | 70.11 |
| Solyc04g010090.2.1 | Tomato | nucleus | 62.57 | 69.57 |
| KRH02410 | Soybean | cytosol | 67.6 | 68.36 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 59.78 | 67.3 |
| KRH73515 | Soybean | cytosol | 63.69 | 63.33 |
| CDY33086 | Canola | plastid | 40.22 | 62.07 |
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 50.28 | 55.9 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 55.31 | 54.4 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 54.19 | 53.89 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 41.9 | 52.08 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 52.51 | 50.54 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 61.45 | 50.0 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 61.45 | 50.0 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 60.89 | 49.77 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 60.34 | 49.32 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 55.87 | 49.02 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 58.66 | 48.84 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 61.45 | 48.25 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 60.89 | 48.23 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 60.34 | 48.21 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 59.78 | 47.77 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 59.78 | 47.77 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 55.87 | 47.62 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 59.78 | 47.56 |
| Zm00001d029473_P001 | Maize | plastid | 59.78 | 47.56 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 48.04 | 47.51 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 30.17 | 47.37 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 29.05 | 46.85 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 30.17 | 45.76 |
| Zm00001d047265_P001 | Maize | plastid | 60.34 | 43.2 |
| Zm00001d007933_P001 | Maize | plastid | 36.31 | 38.46 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 20.11 | 37.5 |
| GSMUA_Achr10P... | Banana | cytosol | 53.07 | 23.93 |
| HORVU3Hr1G081540.4 | Barley | plastid | 32.4 | 23.87 |
| Zm00001d008371_P001 | Maize | cytosol | 32.4 | 23.2 |
| Os07t0612500-00 | Rice | nucleus | 30.73 | 12.94 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | GO:A0A078J326 | UniProt:A0A078J326 | EnsemblPlants:CDY56625 |
| ProteinID:CDY56625 | ProteinID:CDY56625.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 |
| EnsemblPlantsGene:GSBRNA2T00019853001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF02291 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 |
| SUPFAM:SSF47113 | InterPro:TFIID-31 | UniParc:UPI0004EB6284 | SEG:seg | : | : |
Description
BnaCnng30810DBnaCnng30810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J326]
Coordinates
chrLK033505:+:44590..45847
Molecular Weight (calculated)
19962.4 Da
IEP (calculated)
4.407
GRAVY (calculated)
-0.607
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVVHQFLELW YRYVVEVLTD AQVYSEHASK STIDCDDVKL AIQSKVSFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGI PLPPEQDTLL SPNYQLVIPK RSASAEPEET EDDEEMADPA QSSSQEQQTS ELPSQTPQRV SFPLSRRPK
101: LPKSIAGPGI PLPPEQDTLL SPNYQLVIPK RSASAEPEET EDDEEMADPA QSSSQEQQTS ELPSQTPQRV SFPLSRRPK
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.