CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX81826
CDX84083
CDX87098
CDY00904
CDY02479
CDY03944
CDY05378
CDY05473
CDY19814
CDY21749
CDY22214
CDY26139
CDY26245
CDY38963
CDY39435
CDY41320
CDY44660
CDY48302
CDY56625
CDY60164
CDY60273
CDY69783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	CDX81826	AT1G17440.1	17340043
AT5G25150.1	CDY21749	AT1G17440.1	17340043
AT5G25150.1	CDY26245	AT1G17440.1	17340043
AT5G25150.1	CDY48302	AT1G17440.1	17340043
AT5G25150.1	CDY03944	AT1G27720.1	17340043
AT5G25150.1	CDY60273	AT1G27720.1	17340043
AT5G25150.1	CDX84083	AT1G32750.1	17340043
AT5G25150.1	CDY44660	AT1G32750.1	17340043
AT5G25150.1	CDY02479	AT1G54140.1	17340043
AT5G25150.1	CDY26139	AT1G54140.1	17340043
AT5G25150.1	CDY56625	AT1G54140.1	17340043
AT5G25150.1	CDY00904	AT3G10070.1	17340043
AT5G25150.1	CDY22214	AT3G10070.1	17340043
AT5G25150.1	CDY41320	AT3G10070.1	17340043
AT5G25150.1	CDY60164	AT3G10070.1	17340043
AT5G25150.1	CDX75423	AT4G34340.1	17340043
AT5G25150.1	CDY69783	AT4G34340.1	17340043
AT5G25150.1	CDX87098	AT5G25150.1	17340043
AT5G25150.1	CDY05378	AT5G25150.1	17340043
AT5G25150.1	CDY05473	AT5G25150.1	17340043
AT5G25150.1	CDY19814	AT5G25150.1	17340043
AT5G25150.1	CDY38963	AT5G45600.1	17340043
AT5G25150.1	CDY39435	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020485.1-P	Field mustard	nucleus	99.1	99.1
CDY05378	Canola	nucleus	97.45	97.74
CDY19814	Canola	nucleus	91.29	91.02
CDX87098	Canola	nucleus	91.29	91.02
AT5G25150.1	Thale cress	nucleus	90.09	89.69
Zm00001d044810_P001	Maize	nucleus	16.07	82.95
GSMUA_Achr9P22400_001	Banana	cytosol	20.57	80.12
VIT_04s0008g05780.t01	Wine grape	nucleus	74.02	72.93
KRH52333	Soybean	nucleus	71.17	71.49
Zm00001d053142_P001	Maize	nucleus	17.27	71.43
KRH61671	Soybean	nucleus	70.87	70.55
HORVU0Hr1G022460.1	Barley	nucleus	51.35	69.94
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	19.07	69.4
Solyc06g065700.2.1	Tomato	nucleus	70.72	68.76
TraesCS7B01G416400.1	Wheat	nucleus	50.45	68.71
KRH05348	Soybean	nucleus	67.57	68.39
KRG99418	Soybean	cytosol, extracellular, plastid	8.86	67.82
Zm00001d016330_P001	Maize	extracellular	14.56	66.9
KXG20501	Sorghum	nucleus	65.92	66.82
TraesCS5D01G324200.2	Wheat	nucleus	65.77	66.77
HORVU7Hr1G113760.2	Barley	nucleus	65.77	66.77
TraesCS5B01G318400.1	Wheat	nucleus	65.62	66.62
TraesCS7D01G496500.1	Wheat	nucleus	64.71	66.21
Zm00001d046810_P002	Maize	nucleus	65.77	65.08
Os07t0205200-02	Rice	cytosol, nucleus	23.27	61.26
GSMUA_Achr9P22410_001	Banana	cytosol	33.03	58.98
GSMUA_Achr7P26980_001	Banana	nucleus	67.57	58.9
TraesCS7A01G467500.1	Wheat	nucleus	19.82	54.77
KRH15679	Soybean	cytosol	9.91	51.97
CDX68590	Canola	cytosol	13.06	27.1
CDY43529	Canola	cytosol	13.06	27.1
CDY03567	Canola	cytosol	12.76	26.48
CDY14200	Canola	cytosol	12.76	26.48
CDY11502	Canola	cytosol	10.36	19.94
CDX76728	Canola	cytosol	10.21	19.65
CDY57442	Canola	cytosol	6.46	19.55
CDY23845	Canola	nucleus	12.16	18.84
CDX79933	Canola	nucleus	12.01	18.65
CDY06918	Canola	cytosol, nucleus, peroxisome	12.16	16.7
CDY14776	Canola	mitochondrion	12.76	15.4
CDY12836	Canola	extracellular, vacuole	1.95	15.29
CDY18648	Canola	cytosol	13.06	15.21
CDY41854	Canola	cytosol	12.31	15.07
CDX81324	Canola	cytosol	13.21	14.33
CDX77335	Canola	cytosol	8.41	13.27
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	16.82	12.9
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	16.82	12.9
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	16.82	12.86
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	16.67	12.66
CDY22910	Canola	nucleus	16.52	11.82
CDY54973	Canola	nucleus	16.37	11.71
CDY12834	Canola	endoplasmic reticulum, extracellular	2.85	10.22
CDY57444	Canola	cytosol, mitochondrion	4.2	9.66
CDY27109	Canola	cytosol	1.5	8.85
CDY40782	Canola	cytosol	1.5	8.85
CDY43370	Canola	cytosol	1.5	8.85
CDY72066	Canola	cytosol	1.5	8.85
CDX92625	Canola	cytosol	1.5	8.85

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	GO:A0A078F0W2	EnsemblPlants:CDY05473
ProteinID:CDY05473	ProteinID:CDY05473.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00120392001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264
InterPro:LisH	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897
SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI0004EED2F1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA02g32180D

Coordinates

chrLK031962:+:331918..336699

Molecular Weight (calculated)

74238.6 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.465

Length

666 amino acids

Sequence
(BLAST)

001: MDPEQVDEFV MGYLKKKGFN SAAKHLQESL HNNNGSSFSS NDYHNDPELN KLIRSFSQSE NDPSRYREGY SKLRSWGYNS LDLYKHELLR VMYPVFIHCY
101: MDLVGKGHTQ EARAFFNSFR KDHEMVHLRD LQKLGGVLAP THLQEMEFAR SLRQSKINIK ICQYSYDLLL QYLHRTESTL MLGIINEHIN FQVYSGQPNS
201: ASDDIEAVTI VGSFHETADH VNQKEIHWGL LEDSLEDRLE KTGGLLSDSE KGQGESKAGD MDDSKKRSAE IGKQGSSIKK LKKDKAGTAT TKVARQETST
301: VLSSMPRVKP ELAMPVMSAD VEESILEDLR NRVQLSSIAM PSVSFYTFVN THNGLNSSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSC ALQDENNQTV
401: GLNGRRNYTL LVGHSGPVYS ATFSPPGDYV LSSSADTTIR LWSTKLNANL VCYKGHNHTV WDAQFSPFGH YFASCSHDRT ARIWSMDRMQ PLRMMAGHLS
501: DVDCVQWHPN CNYIATGSSD KTVRLWDVQT GECVRIFIGH RSMVLSLAMS PDGRYMASGD EDGTIMMWDL STARCITPLM GHNSCVWTLS YSGEGSLLAS
601: GSADCTVKLW DVSSSTKLTK AEEKNGNSNR LRSLRTFPTK STPVHALRFS RRNLLFAAGA ISKPSS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.