Factsheet for AT5G25150.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036534.1-P	Field mustard	nucleus	92.68	92.81
CDY19814	Canola	nucleus	92.53	92.66
CDX87098	Canola	nucleus	92.38	92.52
CDY05473	Canola	nucleus	89.69	90.09
Bra020485.1-P	Field mustard	nucleus	89.39	89.79
CDY05378	Canola	nucleus	88.94	89.61
Zm00001d044810_P001	Maize	nucleus	16.14	83.72
GSMUA_Achr9P22400_001	Banana	cytosol	20.33	79.53
VIT_04s0008g05780.t01	Wine grape	nucleus	76.38	75.59
KRH52333	Soybean	nucleus	73.24	73.91
KRH61671	Soybean	nucleus	73.39	73.39
Zm00001d053142_P001	Maize	nucleus	17.64	73.29
HORVU0Hr1G022460.1	Barley	nucleus	53.51	73.21
Solyc06g065700.2.1	Tomato	nucleus	73.54	71.82
TraesCS7B01G416400.1	Wheat	nucleus	52.47	71.78
KRH05348	Soybean	nucleus	69.81	70.97
TraesCS5D01G324200.2	Wheat	nucleus	68.31	69.66
TraesCS5B01G318400.1	Wheat	nucleus	68.16	69.51
HORVU7Hr1G113760.2	Barley	nucleus	68.16	69.51
KXG20501	Sorghum	nucleus	67.86	69.1
TraesCS7D01G496500.1	Wheat	nucleus	67.12	68.97
KRG99418	Soybean	cytosol, extracellular, plastid	8.97	68.97
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	18.83	68.85
Zm00001d046810_P002	Maize	nucleus	67.56	67.16
Zm00001d016330_P001	Maize	extracellular	14.2	65.52
Os07t0205200-02	Rice	cytosol, nucleus	24.36	64.43
GSMUA_Achr9P22410_001	Banana	cytosol	33.93	60.86
GSMUA_Achr7P26980_001	Banana	nucleus	69.21	60.6
TraesCS7A01G467500.1	Wheat	nucleus	20.78	57.68
KRH15679	Soybean	cytosol	10.16	53.54
AT4G29830.1	Thale cress	cytosol	13.15	27.41
AT2G05720.1	Thale cress	cytosol	9.12	22.1
AT2G26060.1	Thale cress	cytosol	10.46	19.89
AT2G41500.1	Thale cress	nucleus, plastid	15.25	18.41
AT4G32990.1	Thale cress	cytosol	8.52	17.38
AT5G67320.1	Thale cress	cytosol	12.71	13.87
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	17.04	13.01
AT3G21540.1	Thale cress	nucleus	16.89	11.83

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	EntrezGene:832586	EMBL:AC006259
ProteinID:AED93406.1	ArrayExpress:AT5G25150	EnsemblPlantsGene:AT5G25150	RefSeq:AT5G25150	TAIR:AT5G25150	RefSeq:AT5G25150-TAIR-G
EnsemblPlants:AT5G25150.1	TAIR:AT5G25150.1	EMBL:AY463620	Unigene:At.43447	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	RefSeq:NP_197897.3
PFAM:PF00400	PFAM:PF04494	PO:PO:0000005	PO:PO:0000293	PO:PO:0009005	PO:PO:0009025
PO:PO:0009049	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19879
UniProt:Q6S7B0	SMART:SM00320	SUPFAM:SSF160897	SUPFAM:SSF50978	Symbol:TAF5	InterPro:TFIID_NTD2
InterPro:TFIID_NTD2_sf	UniParc:UPI0000231267	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]

Coordinates

chr5:+:8677049..8682344

Molecular Weight (calculated)

74417.6 Da

IEP (calculated)

7.120

GRAVY (calculated)

-0.439

Length

669 amino acids

Sequence
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.