Factsheet for Bra020485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra020485.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030061.1-P
Bra030901.1-P
Bra030989.1-P
Bra034092.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	Bra025975.1-P	AT1G17440.1	17340043
AT5G25150.1	Bra030989.1-P	AT1G17440.1	17340043
AT5G25150.1	Bra030061.1-P	AT1G27720.1	17340043
AT5G25150.1	Bra035499.1-P	AT1G32750.1	17340043
AT5G25150.1	Bra030901.1-P	AT1G54140.1	17340043
AT5G25150.1	Bra029816.1-P	AT3G10070.1	17340043
AT5G25150.1	Bra034092.1-P	AT3G10070.1	17340043
AT5G25150.1	Bra011521.1-P	AT4G34340.1	17340043
AT5G25150.1	Bra020485.1-P	AT5G25150.1	17340043
AT5G25150.1	Bra036534.1-P	AT5G25150.1	17340043
AT5G25150.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05473	Canola	nucleus	99.1	99.1
CDY05378	Canola	nucleus	97.45	97.74
Bra036534.1-P	Field mustard	nucleus	91.44	91.17
AT5G25150.1	Thale cress	nucleus	89.79	89.39
Zm00001d044810_P001	Maize	nucleus	16.07	82.95
GSMUA_Achr9P22400_001	Banana	cytosol	20.57	80.12
VIT_04s0008g05780.t01	Wine grape	nucleus	73.87	72.78
KRH52333	Soybean	nucleus	71.17	71.49
Zm00001d053142_P001	Maize	nucleus	17.27	71.43
KRH61671	Soybean	nucleus	70.87	70.55
HORVU0Hr1G022460.1	Barley	nucleus	51.35	69.94
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	19.07	69.4
TraesCS7B01G416400.1	Wheat	nucleus	50.45	68.71
Solyc06g065700.2.1	Tomato	nucleus	70.42	68.47
KRH05348	Soybean	nucleus	67.27	68.09
KRG99418	Soybean	cytosol, extracellular, plastid	8.86	67.82
KXG20501	Sorghum	nucleus	66.07	66.97
Zm00001d016330_P001	Maize	extracellular	14.56	66.9
HORVU7Hr1G113760.2	Barley	nucleus	65.47	66.46
TraesCS5D01G324200.2	Wheat	nucleus	65.32	66.31
TraesCS5B01G318400.1	Wheat	nucleus	65.17	66.16
TraesCS7D01G496500.1	Wheat	nucleus	64.26	65.75
Zm00001d046810_P002	Maize	nucleus	65.92	65.23
Os07t0205200-02	Rice	cytosol, nucleus	23.27	61.26
GSMUA_Achr7P26980_001	Banana	nucleus	67.42	58.77
GSMUA_Achr9P22410_001	Banana	cytosol	32.58	58.18
TraesCS7A01G467500.1	Wheat	nucleus	19.82	54.77
KRH15679	Soybean	cytosol	9.91	51.97
Bra011139.1-P	Field mustard	cytosol	13.06	27.1
Bra007771.1-P	Field mustard	cytosol	10.36	19.94
Bra004625.1-P	Field mustard	nucleus	14.41	19.63
Bra010317.1-P	Field mustard	cytosol	6.16	18.39
Bra016929.1-P	Field mustard	nucleus, plastid	14.56	17.8
Bra037118.1-P	Field mustard	cytosol	13.51	14.71
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.97	13.02
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.67	12.79
Bra039543.1-P	Field mustard	nucleus	16.82	11.86
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	11.26	11.85

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra020485	EnsemblPlants:Bra020485.1
EnsemblPlants:Bra020485.1-P	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	InterPro:LisH	UniProt:M4DVE1
PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897	SUPFAM:SSF50978
InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI0002547043	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator

Coordinates

chrA02:-:25078385..25082904

Molecular Weight (calculated)

74209.6 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.452

Length

666 amino acids

Sequence
(BLAST)

001: MDPEQVDEFV MGYLKKKGFN SAAKHLQESL HNNNGSTFSS IDYHNDPELN KLIRSFSQSE NDPSRYREGY SKLRSWGYNS LDLYKHELVR VMYPVFIHCY
101: MDLVGKGHTQ EARSFFNSFR KDHEMVHLRD LQKLGGVLAP SHLQEMEFAR SLRQSKINIK ICQYSYDLLL QYLHRTESTL MLGIINEHIN FQVYSGQPNS
201: ASDDIEAVTI VGSFHETADH VNQKEIHWGL LEDSLEDRLE KTGGLLSDSE KGQGESKAGD MDDSKKRSAE IGKQGSSIKK LKKDKAGTAT TKVARQETST
301: VLSSMPRVKP ELAMPVMSAD VEESILEDLR NRVQLSSIAM PSVSFYTFVN THNGLNSSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSC ALQDENNQTV
401: GLNGRRNYTL LVGHSGPVYS ATFSPPGDYV LSSSADTTIR LWSTKLNANL VCYKGHNHAV WDAQFSPFGH YFASCSHDRT ARIWSMDRMQ PLRMMAGHLS
501: DVDCVQWHPN CNYIATGSSD KTVRLWDVQT GECVRIFIGH RSMVLSLAMS PDGRYMASGD EDGTIMMWDL STARCITPLM GHNSCVWTLS YSGEGSLLAS
601: GSADCTVKLW DVSSSTKLTK AEEKNGNSNR LRSLRTFPTK STPVHALRFS RRNLLFAAGA ISKPSS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.