Factsheet for Bra010317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011139.1-P	Field mustard	cytosol	50.67	35.2
Bra007771.1-P	Field mustard	cytosol	10.76	6.94
Bra020485.1-P	Field mustard	nucleus	18.39	6.16
Bra036534.1-P	Field mustard	nucleus	18.39	6.14
Bra004625.1-P	Field mustard	nucleus	11.66	5.32
KRG94333	Soybean	cytosol	4.48	4.95
Bra016929.1-P	Field mustard	nucleus, plastid	11.66	4.77
Bra037118.1-P	Field mustard	cytosol	11.66	4.25
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	9.87	3.48
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.45	3.46
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.0	3.34
Bra039543.1-P	Field mustard	nucleus	13.45	3.18
OQU76815	Sorghum	plastid	2.24	2.37
OQU84751	Sorghum	plastid	1.79	1.97
CDX92625	Canola	cytosol	0.9	1.77

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra010317	EnsemblPlants:Bra010317.1	EnsemblPlants:Bra010317.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4D1G7	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090
SMART:SM00320	SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI00025472A0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G29830 (E=2e-040) VIP3 | VIP3 (vernalization independence 3); nucleotide binding / protein binding

Coordinates

chrA08:-:13849524..13850389

Molecular Weight (calculated)

24937.4 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.417

Length

223 amino acids

Sequence
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP SLLLTGSLDE TVKLWRADEL DLVRTNTGHS LGVAAVAAHP SGIIAASSSL DSFYKLEQRL QDDKRTALSL
101: TPARLSWRAS PSSPISWRSG QDDSWRQSTA TSKHKERMKK ENSIYISVSI VSLLLTANLP NHPESLLYSF PTSIEKVYMP LTFPLQSLYI FFATLIRQPS
201: QKDKWNHPYF SSDAKQSKNT STD

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.