Factsheet for Bra036534.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra020485.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030061.1-P
Bra030901.1-P
Bra030989.1-P
Bra034092.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	Bra025975.1-P	AT1G17440.1	17340043
AT5G25150.1	Bra030989.1-P	AT1G17440.1	17340043
AT5G25150.1	Bra030061.1-P	AT1G27720.1	17340043
AT5G25150.1	Bra035499.1-P	AT1G32750.1	17340043
AT5G25150.1	Bra030901.1-P	AT1G54140.1	17340043
AT5G25150.1	Bra029816.1-P	AT3G10070.1	17340043
AT5G25150.1	Bra034092.1-P	AT3G10070.1	17340043
AT5G25150.1	Bra011521.1-P	AT4G34340.1	17340043
AT5G25150.1	Bra020485.1-P	AT5G25150.1	17340043
AT5G25150.1	Bra036534.1-P	AT5G25150.1	17340043
AT5G25150.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19814	Canola	nucleus	99.85	99.85
CDX87098	Canola	nucleus	98.2	98.2
AT5G25150.1	Thale cress	nucleus	92.81	92.68
Bra020485.1-P	Field mustard	nucleus	91.17	91.44
Zm00001d044810_P001	Maize	nucleus	16.02	82.95
GSMUA_Achr9P22400_001	Banana	cytosol	20.36	79.53
VIT_04s0008g05780.t01	Wine grape	nucleus	75.45	74.56
KRH52333	Soybean	nucleus	72.9	73.45
KRH61671	Soybean	nucleus	73.35	73.24
HORVU0Hr1G022460.1	Barley	nucleus	53.29	72.8
Zm00001d053142_P001	Maize	nucleus	17.37	72.05
TraesCS7B01G416400.1	Wheat	nucleus	52.4	71.57
Solyc06g065700.2.1	Tomato	nucleus	73.05	71.24
KRH05348	Soybean	nucleus	69.61	70.67
TraesCS5D01G324200.2	Wheat	nucleus	67.96	69.21
HORVU7Hr1G113760.2	Barley	nucleus	67.96	69.21
TraesCS5B01G318400.1	Wheat	nucleus	67.81	69.05
KRG99418	Soybean	cytosol, extracellular, plastid	8.98	68.97
KXG20501	Sorghum	nucleus	67.52	68.65
TraesCS7D01G496500.1	Wheat	nucleus	66.77	68.51
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	18.71	68.31
Zm00001d046810_P002	Maize	nucleus	67.52	67.01
Zm00001d016330_P001	Maize	extracellular	14.22	65.52
Os07t0205200-02	Rice	cytosol, nucleus	24.1	63.64
GSMUA_Achr9P22410_001	Banana	cytosol	33.98	60.86
GSMUA_Achr7P26980_001	Banana	nucleus	69.01	60.34
TraesCS7A01G467500.1	Wheat	nucleus	20.51	56.85
KRH15679	Soybean	cytosol	10.18	53.54
Bra011139.1-P	Field mustard	cytosol	13.32	27.73
Bra007771.1-P	Field mustard	cytosol	10.63	20.52
Bra004625.1-P	Field mustard	nucleus	14.82	20.25
Bra010317.1-P	Field mustard	cytosol	6.14	18.39
Bra016929.1-P	Field mustard	nucleus, plastid	14.82	18.17
Bra037118.1-P	Field mustard	cytosol	13.77	15.03
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.52	13.48
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.07	13.13
Bra039543.1-P	Field mustard	nucleus	17.07	12.08
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	11.38	12.01

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra036534	EnsemblPlants:Bra036534.1
EnsemblPlants:Bra036534.1-P	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	InterPro:LisH	UniProt:M4F625
PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897	SUPFAM:SSF50978
InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI0002541C81	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G25150 (E=0.0) TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator

Coordinates

chrA09:+:1622249..1626703

Molecular Weight (calculated)

74455.6 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.465

Length

668 amino acids

Sequence
(BLAST)

001: MDPEQVDEFV MGYLKKKGFN NAAKQLQEAL HHNNGGTFNS TDYHNDPELT KLIRSFSQSE NDPTRYRDGY SKLRSWAYNS LDLYKHELLR VMYPVFIHCY
101: MDLVGKGHTQ EARAFFNSFR KDHEMIHLRD LQKLEGVLVP SHLEEMEFAR SLRQSKVNIK ICQYSYDLLL QYLHRTESTL MLGIINEHIN FQVYSGQPNS
201: SSDDIDAVTI VGSFQETADH INQKEIQWGL LEDSLEDRLE KTGSLLSDSE KGQGESKDGD VDDSKKRSNE IGKQGSSLKK LKKDKAGNAT AKVARQETSI
301: VSPAPRVKPE LALPVMSTDV EESILEDLRN RVQLSSVAMP SVSFYTFVNT HNGLNCASIS HDGSLVAGGF SDSSIKVWDM AKIGQAGSGA LQGESDTNDQ
401: NVGPNGRRNY TLLLGHSGPV YSATFSPPGD FVLSSSADTT IRLWSTQLNA NLVCYKGHNY PVWDVQFSPF GHYFASCSHD RTARIWSMDR VQPLRIMAGH
501: LSDVDCVQWH PNCNYIATGS SDKTVRLWDV QTGECVRIFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTARCITP LMGHNSCVWS LSYSGEGSLL
601: ASGSADCTVK LWDVTSSTKL TKAEEKNGNT NRLRSLRTFP TKSTPVHALR FSRRNLLFAA GALSKPAS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.