Factsheet for Bra030989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra014245.1-P
Bra018839.1-P
Bra020485.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030061.1-P
Bra030508.1-P
Bra030989.1-P
Bra033338.1-P
Bra034092.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Bra030508.1-P	AT1G02680.1	17340043
AT1G17440.1	Bra033338.1-P	AT1G02680.1	17340043
AT1G17440.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G17440.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G17440.1	Bra030061.1-P	AT1G27720.1	17340043
AT1G17440.1	Bra035499.1-P	AT1G32750.1	17340043
AT1G17440.1	Bra014245.1-P	AT1G50300.1	17340043
AT1G17440.1	Bra018839.1-P	AT1G50300.1	17340043
AT1G17440.1	Bra029816.1-P	AT3G10070.1	17340043
AT1G17440.1	Bra034092.1-P	AT3G10070.1	17340043
AT1G17440.1	Bra013452.1-P	AT4G20280.1	17340043
AT1G17440.1	Bra011521.1-P	AT4G34340.1	17340043
AT1G17440.1	Bra020485.1-P	AT5G25150.1	17340043
AT1G17440.1	Bra036534.1-P	AT5G25150.1	17340043
AT1G17440.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81826	Canola	plastid	62.56	70.82
Bra025975.1-P	Field mustard	plastid	56.65	53.32
PGSC0003DMT400012398	Potato	nucleus	15.6	50.0
AT1G17440.1	Thale cress	plastid	55.34	49.34
Solyc06g062900.2.1	Tomato	nucleus	18.39	46.67
KRH06174	Soybean	nucleus, plastid	24.14	42.12
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	39.41	40.89
KRH47589	Soybean	nucleus, plastid	37.6	38.23
Solyc03g122020.2.1	Tomato	nucleus, plastid	38.26	36.29
PGSC0003DMT400006601	Potato	nucleus, plastid	37.11	35.37
GSMUA_Achr7P10670_001	Banana	plastid	37.11	35.15
Zm00001d042879_P002	Maize	plastid	25.12	32.28
TraesCS3D01G356600.1	Wheat	nucleus, plastid	27.09	30.44
TraesCS3B01G395300.2	Wheat	nucleus, plastid	26.77	30.24
TraesCS3A01G362900.1	Wheat	nucleus, plastid	26.77	29.91
Zm00001d012396_P003	Maize	nucleus, plastid	26.6	29.4
Os01t0846900-01	Rice	nucleus	25.94	29.15
KXG33694	Sorghum	nucleus, plastid	25.94	28.52
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	26.6	28.37
TraesCS6D01G151600.1	Wheat	nucleus, plastid	18.88	27.51
HORVU6Hr1G032840.2	Barley	nucleus, plastid	18.23	26.49
Bra034092.1-P	Field mustard	plastid	9.36	21.19
Bra029816.1-P	Field mustard	nucleus, plastid	18.06	20.87
TraesCS6B01G190100.1	Wheat	nucleus, plastid	13.96	20.33
TraesCS6A01G161300.1	Wheat	nucleus, plastid	13.96	20.24

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EnsemblPlantsGene:Bra030989	EnsemblPlants:Bra030989.1	EnsemblPlants:Bra030989.1-P
GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4EQB8	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002542B54	SEG:seg

Description

AT1G17440 (E=8e-071) EER4, TAF12B | EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor

Coordinates

chrA09:+:33075103..33078018

Molecular Weight (calculated)

67014.5 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.692

Length

609 amino acids

Sequence
(BLAST)

001: MAEPIRSSSL SPRPLQSPNP MEPSLTSSAP PPSSLQHQRQ RYVTAPVSNS AASPAIAPTT TEGVIQNMAS PSPVEQQTQS QQLARTQQLP IMQQSPMSNY
101: HIAPSPSVNQ IQQQQGQYGG VLRQQGQYGD VLRQQGQYVD VLKQQGQYGD VLRQQGEMDG TMDFVGGAGP SGHLSMLNGG AGPAQMNIHQ SQSLASSSVL
201: PSYLYSVYPP LRHDVEPRQQ SGLVHGSQFH PGSSEQQLHG IGVMESLILR SQMRANPALY PQHRTNPGHM RSQQHVLTLP QVQNFQRTPS LAFINAQLSG
301: LAQNGQAGMV QNSLTQQQQW LKLISEINSP NSQSFRLQPS QRQALLLQQQ FPSAQLHQNS MPLNQQQISH IIHQQSQMNQ AQMNPSQLQQ MQQPQQQQIP
401: INQQQPSPRM PSHAGQRSVG LTGSQPDATE PGATTPGVVR SSQGPEATNQ LLGKRKLQDL VSQVDAHAKL DPDVEDLLLE LADDFLDSVT SFACRLAKHR
501: KSTILEPKDV LLHLEKNLQL TVPGFSSQNK HQTKNVPTDL HKKRIAMGQK LRALVESSLQ GTNASNSKET FRHLMVNPNG ANHLLRPSPT SEQLVSQTPG
601: PRMLRHMKR

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.