Factsheet for Solyc06g062900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc04g077290.1.1
Solyc04g078050.2.1
Solyc05g010570.2.1
Solyc05g018120.1.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc07g006820.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1
Solyc11g040050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT1G17440.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT1G17440.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G17440.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G17440.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT1G17440.1	Solyc07g006820.2.1	AT1G32750.1	17340043
AT1G17440.1	Solyc11g040050.1.1	AT1G50300.1	17340043
AT1G17440.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G17440.1	Solyc05g010570.2.1	AT4G20280.1	17340043
AT1G17440.1	Solyc05g018120.1.1	AT4G20280.1	17340043
AT1G17440.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT1G17440.1	Solyc06g065700.2.1	AT5G25150.1	17340043
AT1G17440.1	Solyc04g077290.1.1	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012398	Potato	nucleus	72.5	91.58
KRH06174	Soybean	nucleus, plastid	47.08	32.38
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	55.0	22.49
Solyc03g122020.2.1	Tomato	nucleus, plastid	59.17	22.12
KRH47589	Soybean	nucleus, plastid	54.58	21.87
CDY21749	Canola	plastid	48.33	20.71
Zm00001d042879_P002	Maize	plastid	40.83	20.68
CDX81826	Canola	plastid	46.25	20.63
Bra025975.1-P	Field mustard	plastid	51.25	19.01
CDY26245	Canola	plastid	51.25	18.89
CDY48302	Canola	plastid	46.25	18.75
Bra030989.1-P	Field mustard	plastid	46.67	18.39
Os01t0846900-01	Rice	nucleus	40.83	18.08
GSMUA_Achr7P10670_001	Banana	plastid	48.33	18.04
AT1G17440.1	Thale cress	plastid	51.25	18.01
TraesCS3D01G356600.1	Wheat	nucleus, plastid	40.42	17.9
TraesCS3B01G395300.2	Wheat	nucleus, plastid	40.0	17.81
TraesCS3A01G362900.1	Wheat	nucleus, plastid	40.0	17.61
Zm00001d012396_P003	Maize	nucleus, plastid	40.42	17.6
KXG33694	Sorghum	nucleus, plastid	40.42	17.51
TraesCS6D01G151600.1	Wheat	nucleus, plastid	30.42	17.46
HORVU6Hr1G032840.2	Barley	nucleus, plastid	30.42	17.42
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	39.58	16.64
Solyc09g009680.2.1	Tomato	nucleus, plastid	28.75	12.19
TraesCS6A01G161300.1	Wheat	nucleus, plastid	18.33	10.48
TraesCS6B01G190100.1	Wheat	nucleus, plastid	17.08	9.81

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538	GO:GO:0043966
GO:GO:0046695	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4C721
PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc06g062900.2
EnsemblPlants:Solyc06g062900.2.1	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002766B33	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:39699185..39702196

Molecular Weight (calculated)

25874.9 Da

IEP (calculated)

4.269

GRAVY (calculated)

-0.715

Length

240 amino acids

Sequence
(BLAST)

001: MLLNPEELSQ TAQPAQQQLG YPQMHQNQQL QQQQQQPQQV LHQQQSSPAM NSPGGHNLLS LTGSEPDATG SGTTTPGSSS SQGAEASNQF LGKRKIQDLV
101: SQVDPQGRVD PEVEQFLLEI ADDFIDSVTT FSCNLAKHRK SSTLESKDIL LHLEKDWNLT VPGFSSEDKK HCPEHSSGDL CKERLEMIPD MMEASPQAEA
201: STSSSAKEIV SPGLGDQVGS TDIIGPPSSE ELASPSNGEI

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.