Factsheet for Zm00001d042879_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011605_P001
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d021426_P002
Zm00001d025112_P001
Zm00001d029598_P003
Zm00001d039729_P004
Zm00001d039731_P002
Zm00001d040757_P002
Zm00001d040759_P002
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042792_P002
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046579_P019
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Zm00001d040757_P002	AT1G02680.1	17340043
AT1G17440.1	Zm00001d040759_P002	AT1G02680.1	17340043
AT1G17440.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT1G17440.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT1G17440.1	Zm00001d029598_P003	AT1G27720.1	17340043
AT1G17440.1	Zm00001d039729_P004	AT1G27720.1	17340043
AT1G17440.1	Zm00001d039731_P002	AT1G27720.1	17340043
AT1G17440.1	Zm00001d046579_P019	AT1G32750.1	17340043
AT1G17440.1	Zm00001d021426_P002	AT1G50300.1	17340043
AT1G17440.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G17440.1	Zm00001d011605_P001	AT4G20280.1	17340043
AT1G17440.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT1G17440.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT1G17440.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G17440.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G17440.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G17440.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G17440.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33694	Sorghum	nucleus, plastid	95.78	81.95
Zm00001d012396_P003	Maize	nucleus, plastid	86.29	74.23
Os01t0846900-01	Rice	nucleus	73.63	64.39
TraesCS3A01G362900.1	Wheat	nucleus, plastid	71.31	62.02
TraesCS3D01G356600.1	Wheat	nucleus, plastid	70.46	61.62
TraesCS3B01G395300.2	Wheat	nucleus, plastid	69.41	61.04
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	72.15	59.89
HORVU6Hr1G032840.2	Barley	nucleus, plastid	41.35	46.78
TraesCS6D01G151600.1	Wheat	nucleus, plastid	40.93	46.41
PGSC0003DMT400012398	Potato	nucleus	17.09	42.63
Solyc06g062900.2.1	Tomato	nucleus	20.68	40.83
TraesCS6B01G190100.1	Wheat	nucleus, plastid	35.02	39.71
TraesCS6A01G161300.1	Wheat	nucleus, plastid	32.91	37.14
KRH06174	Soybean	nucleus, plastid	24.89	33.81
GSMUA_Achr7P10670_001	Banana	plastid	43.67	32.19
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	37.13	29.98
KRH47589	Soybean	nucleus, plastid	37.34	29.55
CDY48302	Canola	plastid	36.29	29.05
PGSC0003DMT400006601	Potato	nucleus, plastid	38.61	28.64
Solyc03g122020.2.1	Tomato	nucleus, plastid	38.61	28.5
CDX81826	Canola	plastid	32.28	28.44
CDY21749	Canola	plastid	32.7	27.68
Bra025975.1-P	Field mustard	plastid	37.76	27.67
CDY26245	Canola	plastid	37.34	27.19
AT1G17440.1	Thale cress	plastid	38.4	26.65
Bra030989.1-P	Field mustard	plastid	32.28	25.12
Zm00001d042792_P002	Maize	nucleus, plastid	22.57	21.75

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	UniProt:A0A1D6N779	GO:GO:0000124	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046695	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	ProteinID:ONM36443.1	ProteinID:ONM36446.1	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0008429ABC	EnsemblPlantsGene:Zm00001d042879
EnsemblPlants:Zm00001d042879_P002	EnsemblPlants:Zm00001d042879_T002	SEG:seg	:	:	:

Description

transcription associated factor1Transcription initiation factor TFIID subunit 12b

Coordinates

chr3:+:182649721..182654210

Molecular Weight (calculated)

50560.2 Da

IEP (calculated)

10.796

GRAVY (calculated)

-0.569

Length

474 amino acids

Sequence
(BLAST)

001: MDYPPRPPQL QAPSPTQAGP GAAGFGQIPR SGSASRLSTA SQLQQYAARM YGGQMSFSGG GGLVGQQQQL AGRTPVLGQG QLGMLQGQGN AGSAAHFGLQ
101: SQMMAQARQK GMAQGTQLNN ANTAQALQGM QHMGVMGTMG MNQMRPNGTI PYGAQQRFAH AQMRPQASQQ PALSPQKVPG QGLSRTASIA ALNSQLSGSS
201: QNGQMVAMSM PQQQQWLKQI QSSMGSPVSP QQQYQQQRLL FMQQLQQKTG LSQQQLLQIQ QQHPHLTAQQ LIQQQQILQQ FQQQQLLQSP RVSASGSQKS
301: ANLTGSQPGT PLSGGTMTGG SASQGAEGTS QLLGKRKIQD LVAQVDPLGK VDPEVEDLLL EIADDFIDSV TAFACTLAKH RKSSVVEAKD VLLHLERNWH
401: LSVPGFSRED KNPQRNSVKP LVDPQQSESD VTGIRGTSNK LGANNSVGNH QIRPPMAETS AVPTVGSLSK APRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.