Factsheet for PGSC0003DMT400006601

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400009911
PGSC0003DMT400012398
PGSC0003DMT400012607
PGSC0003DMT400023148
PGSC0003DMT400048896
PGSC0003DMT400050569
PGSC0003DMT400055395
PGSC0003DMT400076353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	PGSC0003DMT400076353	AT1G02680.1	17340043
AT1G17440.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT1G17440.1	PGSC0003DMT400012398	AT1G17440.1	17340043
AT1G17440.1	PGSC0003DMT400055395	AT1G27720.1	17340043
AT1G17440.1	PGSC0003DMT400048896	AT1G50300.1	17340043
AT1G17440.1	PGSC0003DMT400023148	AT3G10070.1	17340043
AT1G17440.1	PGSC0003DMT400050569	AT4G20280.1	17340043
AT1G17440.1	PGSC0003DMT400009911	AT4G34340.1	17340043
AT1G17440.1	PGSC0003DMT400012607	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122020.2.1	Tomato	nucleus, plastid	83.26	82.87
PGSC0003DMT400012398	Potato	nucleus	19.09	64.21
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	51.33	55.88
KRH06174	Soybean	nucleus, plastid	28.95	53.01
KRH47589	Soybean	nucleus, plastid	49.14	52.42
CDY26245	Canola	plastid	45.38	44.55
CDY48302	Canola	plastid	40.38	43.58
Bra025975.1-P	Field mustard	plastid	43.98	43.43
AT1G17440.1	Thale cress	plastid	45.54	42.61
CDX81826	Canola	plastid	33.96	40.33
GSMUA_Achr7P10670_001	Banana	plastid	39.59	39.35
Zm00001d042879_P002	Maize	plastid	28.64	38.61
CDY21749	Canola	plastid	33.49	38.21
Bra030989.1-P	Field mustard	plastid	35.37	37.11
Os01t0846900-01	Rice	nucleus	30.67	36.16
TraesCS3A01G362900.1	Wheat	nucleus, plastid	30.83	36.15
TraesCS3D01G356600.1	Wheat	nucleus, plastid	30.52	35.98
TraesCS3B01G395300.2	Wheat	nucleus, plastid	30.2	35.81
Zm00001d012396_P003	Maize	nucleus, plastid	30.83	35.75
KXG33694	Sorghum	nucleus, plastid	30.52	35.2
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	30.83	34.5
TraesCS6D01G151600.1	Wheat	nucleus, plastid	21.13	32.3
HORVU6Hr1G032840.2	Barley	nucleus, plastid	20.5	31.26
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.43	25.0
TraesCS6B01G190100.1	Wheat	nucleus, plastid	15.81	24.16
PGSC0003DMT400023148	Potato	nucleus, plastid	18.62	21.21

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EMBL:AB192883	ProteinID:BAE46416	ProteinID:BAE46416.1
ncoils:Coil	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0ZRP1	PFAM:PD012998	PFAM:PF03847
EnsemblPlantsGene:PGSC0003DMG400002568	PGSC:PGSC0003DMG400002568	EnsemblPlants:PGSC0003DMT400006601	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113
InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000295A653	SEG:seg	:	:

Description

TATA binding protein associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002568]

Coordinates

chr3:+:61237398..61246986

Molecular Weight (calculated)

70420.4 Da

IEP (calculated)

10.208

GRAVY (calculated)

-0.914

Length

639 amino acids

Sequence
(BLAST)

001: MAEIPSSSPK LTQPSNPIID TTNQVSAAGA ASSATSSNPG ITMTSPSNNN SIAQSPSIDL PQIPLTQSQQ QQQQHQIQMQ QPQQMQQQQQ QQLTQSQQQQ
101: QMQLQQQQNN SSNLNGSNSN LMSASNFQMQ QNLQRSPSMA RMSQLQMQQQ QQQFGLMRQQ SGGLYGQMNF GVGGTSLQQQ QQQQLQQQQQ QLQQQFQQQQ
201: QQQQQQNQQQ QQIGGQMGSG NLARTALMGQ TGHLPMLSGQ AAVAAAAVAQ FNLQSQFLNS PRQKAGLMQG NQFHTGNSHG QSLQAMGMMG SLNMSSQLRA
301: NGALAYAQRM SQSQLRQQQL SQQNPLTTTQ KISAQSLPRT SFANSQLPGL TQNGQSAIMQ NNSSQQQWLK PIPAISTPNS PSFRLQQQRQ QMLLQHQNSM
401: GLNPQQLSQI VQQQQQIGHP QMQQLQQQQQ QQQQLSHQQQ SSPRMAAPAG QKSLSLTGSQ PDATGSGTTT PGGSSSQGTE ASNQLLGKRK IQDLVSQVDA
501: QGKLDPEVED LLLEIADDFI DSVTTFACNL AKHRKSSTLE SKDVLLHLEK NWHLTIPGFS SEERKHYPEN SSSDLHKKRL DVIRTLMETS QTETSTNSSA
601: KETVRPGAGE SNHMIRPPSS DNMVSQSNAS QMLHEMTRF

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.