Factsheet for PGSC0003DMT400009911

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400009911
PGSC0003DMT400012398
PGSC0003DMT400023148
PGSC0003DMT400055395
PGSC0003DMT400076353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	PGSC0003DMT400076353	AT1G02680.1	17340043
AT4G34340.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT4G34340.1	PGSC0003DMT400012398	AT1G17440.1	17340043
AT4G34340.1	PGSC0003DMT400055395	AT1G27720.1	17340043
AT4G34340.1	PGSC0003DMT400023148	AT3G10070.1	17340043
AT4G34340.1	PGSC0003DMT400009911	AT4G34340.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008150.1.1	Tomato	nucleus	88.77	89.01
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	54.28	55.16
KRH19914	Soybean	cytosol	44.65	47.18
KRH32528	Soybean	cytosol	42.51	44.66
GSMUA_Achr9P26740_001	Banana	nucleus	38.24	43.73
AT4G34340.1	Thale cress	nucleus	40.64	43.06
GSMUA_Achr11P...	Banana	nucleus	41.44	42.94
CDX75423	Canola	nucleus	38.5	41.5
Bra011521.1-P	Field mustard	nucleus	37.97	41.04
GSMUA_Achr9P09310_001	Banana	nucleus	36.36	40.84
CDY69783	Canola	nucleus	39.04	40.67
Zm00001d041530_P001	Maize	cytosol	37.97	39.78
EES15849	Sorghum	cytosol	38.77	38.56
Os12t0574800-02	Rice	nucleus	37.17	37.98
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	36.1	37.5
Zm00001d041766_P001	Maize	cytosol	36.9	37.3
TraesCS5B01G084700.1	Wheat	cytosol	36.1	37.29
EES17247	Sorghum	cytosol	36.63	37.23
TraesCS5A01G081700.1	Wheat	cytosol	35.83	37.02
Os03t0603300-01	Rice	cytosol, plastid	26.2	35.13
TraesCS7D01G036000.1	Wheat	mitochondrion	29.68	32.65
TraesCSU01G065200.1	Wheat	cytosol	29.68	31.27
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	28.88	30.86
PGSC0003DMT400026858	Potato	mitochondrion, nucleus	21.39	29.52
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	26.47	25.19

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102603303	MapMan:15.3.5.3.8	InterPro:BTP	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0ZX45
PFAM:PF07524	PFAM:PF10406	EnsemblPlantsGene:PGSC0003DMG400003883	PGSC:PGSC0003DMG400003883	EnsemblPlants:PGSC0003DMT400009911	PANTHER:PTHR12321
PANTHER:PTHR12321:SF53	SMART:SM00576	SUPFAM:SSF47113	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI000294FEDE
RefSeq:XP_015167310.1	SEG:seg	:	:	:	:

Description

Tbp-associated factor taf [Source:PGSC_GENE;Acc:PGSC0003DMG400003883]

Coordinates

chr9:+:5238175..5240588

Molecular Weight (calculated)

41414.9 Da

IEP (calculated)

5.778

GRAVY (calculated)

-0.549

Length

374 amino acids

Sequence
(BLAST)

001: MIIGGNAEDK REKESTVDNT REERAGTDDF GRAISRTAVA QICESIGFEI FNESALESLA DIAIKYILDL GKTASSSANL AGRTQCNVFD IIHGLEDMCA
101: STGFLRASEV NRCGLSSGIV SEMVEYVESA EEIPFSQPLP HFPVVKHPNL IPSFLQIGET PPFKHIPPWL PAFPDPHTYV RTPTWNERAS DPRADKIELA
201: RQRRKAERSL LNLQQRLVCN GSAVGSTSRQ PDDVGITSSA SKSENPFLAK PFQAGEKDVD PVALPTKLSS EVDDKNHVSL LETFSPAIQA MKDGLSETVN
301: GTEKTLPDKR PAVCLEFRPG KKALGDSLDL RLWKKGSGRN ASLFRRDEDR DDKKRRAELI LRQSRENQQE LTQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.