Factsheet for Os03t0603300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0338100-00
Os01t0846900-01
Os01t0858500-01
Os02t0654400-01
Os03t0441000-01
Os03t0603300-01
Os07t0205200-02
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	Os01t0338100-00	AT1G02680.1	17340043
AT4G34340.1	Os01t0846900-01	AT1G17440.1	17340043
AT4G34340.1	Os02t0654400-01	AT1G27720.1	17340043
AT4G34340.1	Os03t0441000-01	AT1G27720.1	17340043
AT4G34340.1	Os01t0858500-01	AT3G10070.1	17340043
AT4G34340.1	Os03t0603300-01	AT4G34340.1	17340043
AT4G34340.1	Os12t0574800-02	AT4G34340.1	17340043
AT4G34340.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G065200.1	Wheat	cytosol	53.41	41.97
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	51.97	41.43
TraesCS7D01G036000.1	Wheat	mitochondrion	50.18	41.18
Os12t0574800-02	Rice	nucleus	51.97	39.62
GSMUA_Achr9P26740_001	Banana	nucleus	39.78	33.95
GSMUA_Achr11P...	Banana	nucleus	41.22	31.86
GSMUA_Achr9P09310_001	Banana	nucleus	34.05	28.53
VIT_14s0068g00340.t01	Wine grape	nucleus	38.35	28.38
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	37.28	28.26
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	38.35	27.23
Solyc09g008150.1.1	Tomato	nucleus	35.84	26.81
PGSC0003DMT400009911	Potato	nucleus	35.13	26.2
AT4G34340.1	Thale cress	nucleus	31.54	24.93
KRH19914	Soybean	cytosol	31.54	24.86
Bra011521.1-P	Field mustard	nucleus	30.47	24.57
CDX75423	Canola	nucleus	30.11	24.21
KRH32528	Soybean	cytosol	30.47	23.88
CDY69783	Canola	nucleus	30.47	23.68
KRH01313	Soybean	cytosol	32.26	23.62
KRH45059	Soybean	cytosol	30.47	22.31
AT5G15570.1	Thale cress	nucleus	25.81	18.9
AT3G02160.1	Thale cress	cytosol	26.88	18.89
Bra023525.1-P	Field mustard	cytosol	25.45	18.83
Bra039159.1-P	Field mustard	nucleus	25.45	18.83
Bra008690.1-P	Field mustard	nucleus	24.37	18.78
Os02t0699900-01	Rice	cytosol, nucleus, plastid	15.77	18.41
CDY43254	Canola	nucleus	23.66	18.33
CDY60474	Canola	nucleus	24.37	18.04
CDX74271	Canola	cytosol	21.86	16.27
Bra001033.1-P	Field mustard	cytosol	21.86	16.14
CDX91978	Canola	cytosol, extracellular, nucleus	21.15	15.17

Protein Annotations

EnsemblPlants:Os03t0603300-01	EnsemblPlantsGene:Os03g0603300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046982
InterPro:TFIID_su8_C	PANTHER:PTHR12321	PANTHER:PTHR12321:SF45	PFAM:PF10406	ProteinID:BAF12541.1	ProteinID:BAS85208.1
SEG:seg	UniParc:UPI0000E12140	UniProt:Q0DQE7	MapMan:15.3.5.3.8	:	:

Description

Similar to Bromodomain associated family protein, expressed. (Os03t0603300-01)

Coordinates

chr3:-:22595988..22603461

Molecular Weight (calculated)

30740.6 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.391

Length

279 amino acids

Sequence
(BLAST)

001: ECGAAYYGFA GAASVSARCL ANSAVVKDMA VFVGASKESP FAGRPLPRFP VQRVPLHSTT SFAVLGRESG MSHVPEWLPA FPEPHTYVRS ELWSEEVAKA
101: GADEVERARQ RRKAEKSLLS LQRRLALAGA DGFRPGMLVD DAVKANGLDV VESKANPFHE RALPYGEKAV SEVTMPGVGK TFSVVEAFAP AFEESKGGEF
201: DEGMDQGQND SQTQKRVVPK ERPPVYFRIG IDKKSMVMAL NSRALVELKD PWFFKEDKEQ RAELILREAM DNPHELTQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.