Factsheet for VIT_14s0068g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	54.91	56.25
KRH01313	Soybean	cytosol	54.64	54.07
KRH45059	Soybean	cytosol	53.05	52.49
GSMUA_Achr9P26740_001	Banana	nucleus	43.24	49.85
GSMUA_Achr11P...	Banana	nucleus	45.36	47.37
GSMUA_Achr9P09310_001	Banana	nucleus	41.11	46.55
Zm00001d041530_P001	Maize	cytosol	37.4	39.5
Os03t0603300-01	Rice	cytosol, plastid	28.38	38.35
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	36.6	38.33
EES17247	Sorghum	cytosol	37.4	38.32
TraesCS5A01G081700.1	Wheat	cytosol	36.6	38.12
TraesCS5B01G084700.1	Wheat	cytosol	36.6	38.12
EES15849	Sorghum	cytosol	37.93	38.03
Os12t0574800-02	Rice	nucleus	36.6	37.7
Zm00001d041766_P001	Maize	cytosol	36.6	37.3
Bra039159.1-P	Field mustard	nucleus	36.6	36.6
CDY43254	Canola	nucleus	34.48	36.11
CDY60474	Canola	nucleus	36.07	36.07
AT3G02160.1	Thale cress	cytosol	36.87	35.01
Bra023525.1-P	Field mustard	cytosol	34.48	34.48
CDX74271	Canola	cytosol	34.22	34.4
Bra001033.1-P	Field mustard	cytosol	34.48	34.39
TraesCS7D01G036000.1	Wheat	mitochondrion	30.77	34.12
TraesCSU01G065200.1	Wheat	cytosol	32.1	34.08
CDX91978	Canola	cytosol, extracellular, nucleus	35.01	33.93
AT5G15570.1	Thale cress	nucleus	34.22	33.86
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	30.77	33.14
Bra008690.1-P	Field mustard	nucleus	31.57	32.87
VIT_01s0011g01670.t01	Wine grape	nucleus	20.69	30.71
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	26.79	25.7

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100246447	wikigene:100246447	MapMan:15.3.5.3.8	EMBL:AM486098	InterPro:BTP
ProteinID:CAN79809	ProteinID:CAN79809.1	ProteinID:CCB46935	ProteinID:CCB46935.1	UniProt:F6H493	EMBL:FN595232
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
EntrezGene:LOC100246447	wikigene:LOC100246447	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
SMART:SM00576	SUPFAM:SSF47113	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI0001984A4F	ArrayExpress:VIT_14s0068g00340
EnsemblPlantsGene:VIT_14s0068g00340	EnsemblPlants:VIT_14s0068g00340.t01	unigene:Vvi.9664	RefSeq:XP_002277032	RefSeq:XP_002277032.1	RefSeq:XP_010660612.1
RefSeq:XP_010660613.1	RefSeq:XP_010660616.1	RefSeq:XP_010660617.1	RefSeq:XP_010660618.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:24058921..24060831

Molecular Weight (calculated)

41307.5 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.549

Length

377 amino acids

Sequence
(BLAST)

001: MSDGGGESGR ESDRATKRKS SDRDFPQAIA KIAVAQICES AGFQGFQQSA LETLSEVVVR YIRELGKTAH TYANSACRTE CNIFDIIQGL EDLASLQGFS
101: GASDSDHCLA GSGTVREIVQ YVSEAEEIPF AHSVPHFPVI RDRKQTPSFL QIGEEPPGDH IPDWLPAFPD PQTYVHSPVL NERGADPCAG NIEQARQHKK
201: AEWSLLNLQQ QLACNGLEGP SMIDPGDAAK ARRAAETNPF LSAPLHFGEK GVSPVFLPAK LSNEAVVENQ AGENHAVANH VSVLETFAPA IELMKSRSCE
301: SEEGRKKVLS NQRPAVQFKI EIGKKSTGTA LDLSFQNKDV EKITSWFGKD NEKDDKKRRA EKILKESMKN PQELAQL

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.