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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_06s0009g02390.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G31240.1 VIT_06s0009g02390.t01 AT1G50420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27180 Soybean plastid 22.44 35.4
KRH17259 Soybean plastid 31.89 29.67
KRH72903 Soybean cytosol 33.86 29.66
PGSC0003DMT400026858 Potato mitochondrion, nucleus 31.1 29.15
AT1G31240.1 Thale cress nucleus 30.71 28.16
Bra023170.1-P Field mustard nucleus 30.32 27.8
Solyc02g069170.1.1 Tomato mitochondrion 28.74 26.07
Os02t0699900-01 Rice cytosol, nucleus, plastid 24.41 25.94
EES07408 Sorghum mitochondrion, plastid 24.02 24.7
Zm00001d000165_P001 Maize mitochondrion 23.62 24.1
VIT_08s0040g01420.t01 Wine grape cytosol, nucleus, plastid 32.68 22.55
CDY02371 Canola cytosol 20.08 21.34
VIT_14s0068g00340.t01 Wine grape nucleus 30.71 20.69
Zm00001d050853_P001 Maize cytosol 18.5 20.52
Protein Annotations
Gene3D:1.10.20.10MapMan:15.3.5.3.8InterPro:BTPProteinID:CCB51014ProteinID:CCB51014.1UniProt:F6HF58
EMBL:FN595752GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046982InterPro:Histone-fold
InterPro:IPR009072PFAM:PF07524PANTHER:PTHR12321PANTHER:PTHR12321:SF38SMART:SM00576SUPFAM:SSF47113
TIGR:TC60247UniParc:UPI000210A422ArrayExpress:VIT_01s0011g01670EnsemblPlantsGene:VIT_01s0011g01670EnsemblPlants:VIT_01s0011g01670.t01unigene:Vvi.14274
SEG:seg:::::
Description
No Description!
Coordinates
chr1:-:1504667..1506003
Molecular Weight (calculated)
28053.4 Da
IEP (calculated)
10.439
GRAVY (calculated)
-0.611
Length
254 amino acids
Sequence
(BLAST)
001: MESETLETLG PSEFSFAITK VAVAQICQSA GFRTAQSSAL ETITRITTLY LQTLAKSASS RAASSGRTQS NIYDVVHALE HLSSDQGFAG ASNPNGCLLA
101: SSPLLDLIKF VYSRCEIPFA KPLPRRSNLS QNLPLPQNPS NSKQSPHIPT WLPGFPDPST YIEPKTEIPS GLNWNAEVEE RKHSGNEKEK KSRLGNMELP
201: KKRERVTFRM GEAAEAKGPR LGFRVGMKNG VCRGGKRVSW QNHNLQNSKF KRPR
Best Arabidopsis Sequence Match ( AT1G31240.1 )
(BLAST)
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.