Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_06s0009g02390.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G31240.1 | VIT_06s0009g02390.t01 | AT1G50420.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH27180 | Soybean | plastid | 22.44 | 35.4 |
KRH17259 | Soybean | plastid | 31.89 | 29.67 |
KRH72903 | Soybean | cytosol | 33.86 | 29.66 |
PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 31.1 | 29.15 |
AT1G31240.1 | Thale cress | nucleus | 30.71 | 28.16 |
Bra023170.1-P | Field mustard | nucleus | 30.32 | 27.8 |
Solyc02g069170.1.1 | Tomato | mitochondrion | 28.74 | 26.07 |
Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 24.41 | 25.94 |
EES07408 | Sorghum | mitochondrion, plastid | 24.02 | 24.7 |
Zm00001d000165_P001 | Maize | mitochondrion | 23.62 | 24.1 |
VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 32.68 | 22.55 |
CDY02371 | Canola | cytosol | 20.08 | 21.34 |
VIT_14s0068g00340.t01 | Wine grape | nucleus | 30.71 | 20.69 |
Zm00001d050853_P001 | Maize | cytosol | 18.5 | 20.52 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:15.3.5.3.8 | InterPro:BTP | ProteinID:CCB51014 | ProteinID:CCB51014.1 | UniProt:F6HF58 |
EMBL:FN595752 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold |
InterPro:IPR009072 | PFAM:PF07524 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 | SMART:SM00576 | SUPFAM:SSF47113 |
TIGR:TC60247 | UniParc:UPI000210A422 | ArrayExpress:VIT_01s0011g01670 | EnsemblPlantsGene:VIT_01s0011g01670 | EnsemblPlants:VIT_01s0011g01670.t01 | unigene:Vvi.14274 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:1504667..1506003
Molecular Weight (calculated)
28053.4 Da
IEP (calculated)
10.439
GRAVY (calculated)
-0.611
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MESETLETLG PSEFSFAITK VAVAQICQSA GFRTAQSSAL ETITRITTLY LQTLAKSASS RAASSGRTQS NIYDVVHALE HLSSDQGFAG ASNPNGCLLA
101: SSPLLDLIKF VYSRCEIPFA KPLPRRSNLS QNLPLPQNPS NSKQSPHIPT WLPGFPDPST YIEPKTEIPS GLNWNAEVEE RKHSGNEKEK KSRLGNMELP
201: KKRERVTFRM GEAAEAKGPR LGFRVGMKNG VCRGGKRVSW QNHNLQNSKF KRPR
101: SSPLLDLIKF VYSRCEIPFA KPLPRRSNLS QNLPLPQNPS NSKQSPHIPT WLPGFPDPST YIEPKTEIPS GLNWNAEVEE RKHSGNEKEK KSRLGNMELP
201: KKRERVTFRM GEAAEAKGPR LGFRVGMKNG VCRGGKRVSW QNHNLQNSKF KRPR
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.