CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24106
KRH27822
KRH29080
KRH77666

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31240.1	KRH24106	AT1G50420.1	21798944
AT1G31240.1	KRH27822	AT1G50420.1	21798944
AT1G31240.1	KRH29080	AT1G50420.1	21798944
AT1G31240.1	KRH77666	AT1G50420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17259	Soybean	plastid	65.22	38.46
KRH72903	Soybean	cytosol	65.84	36.55
VIT_01s0011g01670.t01	Wine grape	nucleus	35.4	22.44
AT1G31240.1	Thale cress	nucleus	34.78	20.22
Bra023170.1-P	Field mustard	nucleus	33.54	19.49
PGSC0003DMT400026858	Potato	mitochondrion, nucleus	31.68	18.82
Os02t0699900-01	Rice	cytosol, nucleus, plastid	27.33	18.41
EES07408	Sorghum	mitochondrion, plastid	27.95	18.22
Solyc02g069170.1.1	Tomato	mitochondrion	31.06	17.86
Zm00001d050853_P001	Maize	cytosol	24.22	17.03
Zm00001d000165_P001	Maize	mitochondrion	26.09	16.87
KRH45059	Soybean	cytosol	34.78	14.7
KRH01313	Soybean	cytosol	34.16	14.44
CDY02371	Canola	cytosol	18.63	12.55
KRH19914	Soybean	cytosol	26.71	12.15
KRH32528	Soybean	cytosol	24.22	10.96

Protein Annotations

EMBL:ACUP02007781	EnsemblPlants:KRH27180	EnsemblPlantsGene:GLYMA_12G219900	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:BTP	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR12321
PANTHER:PTHR12321:SF38	PFAM:PF07524	ProteinID:KRH27180	ProteinID:KRH27180.1	SEG:seg	SMART:SM00576
UniParc:UPI00023D02BD	UniProt:K7LWC0	MapMan:15.3.5.3.8	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:37944269..37944754

Molecular Weight (calculated)

17587.2 Da

IEP (calculated)

10.989

GRAVY (calculated)

-0.071

Length

161 amino acids

Sequence
(BLAST)

001: MQNNSSTKAT SKLPRRAKSK KRDLVGVNDA QVAETPSEFS FAVAKIAVAQ VCQSVGFKTF KCNALKTLTN VSTRYLETIV RSAASFANAS NRTNSNLFDI
101: INGIHDLCSA QGFPGGSVMH KVNLLRSSAL KDIMNFVNLS NKVPFAKPIP FRNVFQVNVF L

Best Arabidopsis Sequence Match ( AT1G31240.1 )
(BLAST)

001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF

Arabidopsis Description

At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.