CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03283
KRH19966
KRH54391
KRH57077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	KRH03283	AT4G22220.1	21798944
AT1G50420.1	KRH19966	AT4G22220.1	21798944
AT1G50420.1	KRH54391	AT4G22220.1	21798944
AT1G50420.1	KRH57077	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29080	Soybean	cytosol	96.26	96.26
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	73.41	71.83
Solyc12g099900.1.1	Tomato	nucleus	72.97	70.94
PGSC0003DMT400011839	Potato	cytosol	72.97	70.94
CDY68881	Canola	cytosol	38.02	70.9
VIT_06s0009g02390.t01	Wine grape	cytosol	73.41	70.46
CDY45059	Canola	cytosol	46.59	69.74
KRH27822	Soybean	nucleus, plastid	71.87	69.13
PGSC0003DMT400058477	Potato	cytosol	71.65	69.07
Solyc01g008910.2.1	Tomato	cytosol	70.99	67.86
Bra018848.1-P	Field mustard	cytosol	61.32	63.41
Bra014251.1-P	Field mustard	cytosol	61.76	63.15
CDY22795	Canola	cytosol, plastid	60.88	62.39
CDY03601	Canola	cytosol	61.1	61.92
AT1G50420.1	Thale cress	cytosol	65.49	61.83
GSMUA_Achr8P09690_001	Banana	cytosol	57.14	58.3
HORVU3Hr1G106260.1	Barley	cytosol	22.86	58.1
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	59.56	57.29
KRH29971	Soybean	cytosol	54.29	55.88
KRH62871	Soybean	cytosol	53.19	54.63
Os01t0948200-00	Rice	cytosol	49.67	51.13
TraesCS3A01G487500.1	Wheat	cytosol, plastid	49.45	50.34
TraesCS3D01G482600.1	Wheat	cytosol	49.89	49.89
TraesCS3B01G535100.1	Wheat	cytosol	49.67	49.89
Zm00001d042127_P001	Maize	plastid	47.91	48.77
Zm00001d011881_P001	Maize	cytosol	47.25	47.88
EES02045	Sorghum	cytosol, plastid	48.13	47.71
Os06t0211500-00	Rice	cytosol	18.02	42.93
HORVU2Hr1G113480.1	Barley	cytosol	26.81	38.73
HORVU2Hr1G113490.1	Barley	cytosol	26.81	38.73
Os12t0138100-00	Rice	cytosol	41.1	38.01
Os11t0141500-00	Rice	cytosol	40.88	37.8
Zm00001d023248_P001	Maize	cytosol	41.98	37.75
TraesCS2D01G534700.1	Wheat	cytosol	25.93	37.58
TraesCS6D01G055100.1	Wheat	cytosol	25.71	37.26
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	11.43	35.62
EES16518	Sorghum	cytosol	35.16	35.56
TraesCS5B01G133800.1	Wheat	mitochondrion	42.86	35.33
HORVU5Hr1G043310.1	Barley	cytosol	42.42	35.09
TraesCS5A01G135000.1	Wheat	mitochondrion	42.64	34.95
TraesCS5D01G139500.1	Wheat	mitochondrion	42.64	34.7
TraesCS2A01G532900.1	Wheat	cytosol	32.75	34.65
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	23.52	34.29
KXG22822	Sorghum	mitochondrion	41.32	32.58
HORVU4Hr1G026010.3	Barley	cytosol	31.65	32.29
TraesCS4A01G185900.1	Wheat	cytosol	31.65	32.29
EES09233	Sorghum	cytosol	33.85	31.62
Os11t0141700-00	Rice	cytosol	35.16	31.62
KRG92263	Soybean	cytosol	27.69	31.58
Os12t0138200-00	Rice	cytosol	35.38	31.57
KRH29015	Soybean	cytosol	19.56	31.23
TraesCS2B01G562400.1	Wheat	cytosol	32.09	30.8
Zm00001d052463_P001	Maize	cytosol	35.38	30.78
HORVU2Hr1G113360.1	Barley	cytosol	31.87	30.53
TraesCS4D01G127800.2	Wheat	mitochondrion	31.43	30.11
OQU77884	Sorghum	plasma membrane	29.89	29.89
TraesCSU01G014000.1	Wheat	cytosol	18.9	29.25
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	29.67	29.22
CDY37137	Canola	plastid	60.88	29.04
KRH34954	Soybean	cytosol	25.49	28.64
KRH29089	Soybean	mitochondrion	27.47	28.28
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	29.67	27.72
KRH24117	Soybean	plastid	26.59	27.19
OQU77885	Sorghum	cytosol	28.79	27.18
KRH63032	Soybean	cytosol	29.45	26.64
KRH34544	Soybean	cytosol	28.13	26.23
Zm00001d023247_P001	Maize	plastid	31.87	25.89
KRH54840	Soybean	cytosol	28.57	25.74
KRH42544	Soybean	cytosol, nucleus, plastid	29.01	25.53
KRH58636	Soybean	nucleus	29.01	25.24
KRG91825	Soybean	nucleus	25.49	24.95
KRH57194	Soybean	cytosol	27.91	24.85
KRH03910	Soybean	cytosol	27.91	24.71
KRH70202	Soybean	cytosol	25.49	24.37
KRH13057	Soybean	cytosol	29.67	24.32
Os05t0378200-00	Rice	cytosol	29.01	23.96
KRH08555	Soybean	cytosol	24.62	23.78
KRG97933	Soybean	nucleus	29.23	22.77
KRH19587	Soybean	cytosol	26.15	22.62
GSMUA_Achr11P...	Banana	cytosol	54.07	22.32
KRH30942	Soybean	cytosol	28.79	22.02
Os05t0378500-00	Rice	plastid	27.03	21.96
KRG94590	Soybean	plastid	32.75	21.88
KRH32212	Soybean	cytosol	25.71	21.79
KRH06900	Soybean	plastid	32.75	21.72
KRH44884	Soybean	cytosol	20.44	21.48
KRH24039	Soybean	cytosol	21.98	20.79
KRH03976	Soybean	mitochondrion, nucleus	28.35	19.28
KRH57249	Soybean	plastid	27.91	19.13
KRH40615	Soybean	nucleus, plastid	30.99	17.13
KRH00551	Soybean	nucleus, plastid	30.77	16.63
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	0.66	0.85
Os11t0141550-01	Rice	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100800450	MapMan:15.5.12	EMBL:ACUP02007171	EnsemblPlantsGene:GLYMA_12G022100	GO:GO:0000989	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987
GO:GO:0043565	UniProt:I1LPE1	InterPro:IPR005202	EnsemblPlants:KRH24106	ProteinID:KRH24106	ProteinID:KRH24106.1
ProteinID:KRH24107.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13	InterPro:Scarecrow-like_3
InterPro:TF_GRAS	UniParc:UPI000233C741	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1601287..1604144

Molecular Weight (calculated)

51419.2 Da

IEP (calculated)

5.798

GRAVY (calculated)

-0.169

Length

455 amino acids

Sequence
(BLAST)

001: MMSLSPSLGS PNNLLFREMK SEERGLYLIH LLLSCANHVA AGNLENANTT LEQISMLASP DGDTMQRIAT YFMESLADRI LKTWPGIHRA LNSTKMTLIS
101: DEILVQKLFF ELFPFLKVAF VLTNQAIIEA MEGEKVIHII DLNAAEAAQW IALLRVLSAH PEGPPHLRIT GVHQKKEILD EVAHRLTEEA EKLDIPFQFN
201: PVASKLENLD FDKLRVKTGE ALAISSILQL HTLLAWDDEA MQRKSPLLLK SSNGIHLQRV LPMGQSTLGD LLEKDMVNGY TPSPDSTSSS PSSLTTSNSM
301: NMESFLNALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SYAALFDCLE STVSRTSLER LRVEKMLFGE EIKNIIACEG SERKERHEKL EKWFQRFDLA
401: GFGNVPLSYF GMVQARRFLQ SYGCEGYRMR DENGCVLICW EDRPMYSISA WRSRK

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.