Factsheet for Os12t0138100-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662600-02
Os05t0568100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Os01t0662600-02	AT4G22220.1	21798944
AT1G50420.1	Os05t0568100-01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0141500-00	Rice	cytosol	98.98	98.98
Zm00001d023248_P001	Maize	cytosol	75.61	73.52
HORVU5Hr1G043310.1	Barley	cytosol	79.67	71.27
TraesCS5B01G133800.1	Wheat	mitochondrion	79.06	70.47
TraesCS5A01G135000.1	Wheat	mitochondrion	79.27	70.27
TraesCS5D01G139500.1	Wheat	mitochondrion	79.47	69.95
KXG22822	Sorghum	mitochondrion	77.85	66.38
CDY68881	Canola	cytosol	24.8	50.0
CDY45059	Canola	cytosol	30.49	49.34
Os01t0948200-00	Rice	cytosol	40.45	45.02
GSMUA_Achr8P09690_001	Banana	cytosol	40.65	44.84
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	41.06	42.71
Bra014251.1-P	Field mustard	cytosol	38.62	42.7
Bra018848.1-P	Field mustard	cytosol	37.8	42.27
CDY03601	Canola	cytosol	38.01	41.65
Solyc12g099900.1.1	Tomato	nucleus	39.43	41.45
CDY22795	Canola	cytosol, plastid	37.2	41.22
VIT_13s0019g01220.t01	Wine grape	cytosol	40.04	41.21
Os12t0138200-00	Rice	cytosol	42.68	41.18
KRH29080	Soybean	cytosol	38.01	41.1
KRH24106	Soybean	cytosol, nucleus, peroxisome	38.01	41.1
Os11t0141700-00	Rice	cytosol	42.07	40.91
PGSC0003DMT400011839	Potato	cytosol	38.82	40.81
VIT_06s0009g02390.t01	Wine grape	cytosol	39.02	40.51
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	38.01	40.22
AT1G50420.1	Thale cress	cytosol	39.23	40.04
KRH27822	Soybean	nucleus, plastid	38.21	39.75
KRH62871	Soybean	cytosol	35.37	39.28
PGSC0003DMT400058477	Potato	cytosol	37.6	39.19
Solyc01g008910.2.1	Tomato	cytosol	37.2	38.45
KRH29971	Soybean	cytosol	34.35	38.24
Os06t0211500-00	Rice	cytosol	14.43	37.17
Os07t0567700-02	Rice	cytosol	25.2	27.13
Os01t0646300-01	Rice	cytosol	27.03	26.87
Os05t0378200-00	Rice	cytosol	30.08	26.86
Os02t0197300-00	Rice	cytosol	23.78	26.23
Os05t0485400-00	Rice	peroxisome	25.61	25.2
Os05t0574900-01	Rice	plasma membrane	25.2	24.8
Os06t0610350-01	Rice	cytosol	21.54	24.04
Os03t0707600-01	Rice	nucleus	28.86	22.72
Os05t0378500-00	Rice	plastid	25.41	22.32
Os04t0432100-00	Rice	nucleus	22.15	21.63
Os03t0723000-01	Rice	nucleus	25.41	21.63
Os06t0127800-01	Rice	plastid	26.83	21.39
Os11t0124300-01	Rice	nucleus, plastid	26.42	19.97
Os12t0122000-01	Rice	plastid	26.22	19.55
CDY37137	Canola	plastid	37.8	19.5
GSMUA_Achr11P...	Banana	cytosol	38.41	17.15
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	2.64	3.68
Os11t0141550-01	Rice	cytosol	0.2	0.78

Protein Annotations

EntrezGene:107276886	EntrezGene:107277439	MapMan:15.5.12	UniProt:A0A0P0Y6W1	ProteinID:BAT12619.1	ProteinID:BAT15816.1
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR005202	EnsemblPlantsGene:Os12g0138100	EnsemblPlants:Os12t0138100-00	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF32	InterPro:TF_GRAS	UniParc:UPI000393BC2F	RefSeq:XP_015616659.1	RefSeq:XP_015619625.1
SEG:seg	:	:	:	:	:

Description

Similar to GRAS family transcription factor containing protein, expressed. (Os12t0138100-00)

Coordinates

chr12:-:1853601..1855079

Molecular Weight (calculated)

53693.8 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.109

Length

492 amino acids

Sequence
(BLAST)

001: MFQDDMLSSA TSSPASSVYS PSPSPSNGSW VQELSHDQQS VRLIGLLYQC AAEVSAGSFD RANLCLEHIT QLASLDAPHA LQRLAAVFAD ALARKLLNLI
101: PGLSRALLSS ANSADAHLVP VARRHMFDVL PFLKLAYLTT NHAILEAMEG ERFVHVVDFS GPAANPVQWI ALFHAFRGRR EGPPHLRITA VHDSKEFLAN
201: MAAVLSKEAE AFDIAFQFNA VEAKLDEMDF DALRHDLGVR SGEALAVSVV LQLHRLLAVD DGRRHAATGC LTPVQIIARS SPRSFGELLE RELNTRLQLS
301: PDASVVSSLS PHSPAAATAA HPTTSTPKLG SFLSAVRSLS PKIMVMTEQE ANHNGGAFQE RFDEALNYYA SLFDCLQRSA AAAAERARVE RVLLGEEIRG
401: VVACEGAERT ERHERARQWA ARMEAAGMES VGLSYSGAME ARKLLQSCGW VGPYEVRHDA GGHGFFFCWH KRPLYAVTAW RPAASRRGHT RS

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.