Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G089730.1 | |
| HORVU3Hr1G059830.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | HORVU1Hr1G089730.1 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | HORVU3Hr1G059830.7 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 91.64 | 91.3 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 92.36 | 90.88 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 91.45 | 90.63 |
| Os12t0138100-00 | Rice | cytosol | 71.27 | 79.67 |
| Os11t0141500-00 | Rice | cytosol | 71.09 | 79.47 |
| Zm00001d023248_P001 | Maize | cytosol | 67.27 | 73.12 |
| KXG22822 | Sorghum | mitochondrion | 68.18 | 64.99 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 17.27 | 53.07 |
| CDY68881 | Canola | cytosol | 22.36 | 50.41 |
| CDY45059 | Canola | cytosol | 27.64 | 50.0 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 36.73 | 45.29 |
| Bra018848.1-P | Field mustard | cytosol | 34.91 | 43.64 |
| Bra014251.1-P | Field mustard | cytosol | 35.09 | 43.37 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 36.91 | 42.92 |
| CDY22795 | Canola | cytosol, plastid | 34.55 | 42.79 |
| Solyc12g099900.1.1 | Tomato | nucleus | 36.36 | 42.73 |
| CDY03601 | Canola | cytosol | 34.73 | 42.54 |
| KRH29080 | Soybean | cytosol | 35.09 | 42.42 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 35.09 | 42.42 |
| PGSC0003DMT400011839 | Potato | cytosol | 36.0 | 42.31 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 36.73 | 42.26 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 35.09 | 41.51 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 23.64 | 41.27 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 23.64 | 41.27 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 35.45 | 41.14 |
| AT1G50420.1 | Thale cress | cytosol | 35.64 | 40.66 |
| KRH27822 | Soybean | nucleus, plastid | 34.91 | 40.59 |
| PGSC0003DMT400058477 | Potato | cytosol | 34.73 | 40.47 |
| Solyc01g008910.2.1 | Tomato | cytosol | 34.36 | 39.71 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 32.18 | 39.69 |
| Os12t0138200-00 | Rice | cytosol | 36.55 | 39.41 |
| Os11t0141700-00 | Rice | cytosol | 36.18 | 39.33 |
| KRH29971 | Soybean | cytosol | 31.09 | 38.69 |
| KRH62871 | Soybean | cytosol | 31.09 | 38.6 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.27 | 32.31 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 27.27 | 31.58 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 23.27 | 27.41 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 20.18 | 26.06 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 21.82 | 25.92 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 24.36 | 25.0 |
| HORVU3Hr1G058100.1 | Barley | plastid | 25.27 | 24.69 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 20.0 | 24.66 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 22.91 | 23.73 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 24.18 | 23.62 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 25.45 | 22.65 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 19.45 | 22.34 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 23.45 | 22.05 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 13.82 | 21.53 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 20.55 | 20.43 |
| CDY37137 | Canola | plastid | 34.55 | 19.92 |
| GSMUA_Achr11P... | Banana | cytosol | 34.55 | 17.24 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 3.09 | 4.82 |
| Os11t0141550-01 | Rice | cytosol | 0.55 | 2.33 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G043310.1 | EnsemblPlantsGene:HORVU5Hr1G043310 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF32 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg |
| UniParc:UPI000B482A61 | UniProt:A0A287QZI3 | MapMan:15.5.12 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:333546455..333548332
Molecular Weight (calculated)
60196.5 Da
IEP (calculated)
7.090
GRAVY (calculated)
-0.231
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: LLLPTRQGDR TMPWLDSLDN LNYSLQGVEP RTWGGIASIM FQQQQPPQQH QQQQEDVMSS ATSSPASTLY SPTPYASAGT WVKELSSDQC SVRLISLLYQ
101: CASEVAAGAL DRANLCLEHI MQLASLDAPH TLQRLAAVFA DALARKLLNL VPGLSRALLS ASSADDAHLV PAARRHMFDM LPFLKLAYLT TNHAILEAME
201: GERFVHVVDL SGPAANPAQW IALFHAFRGR RDGTPNLRIT AVHESKEFLA GMSAVLVREA EAFDIPFQFN AVEARLEDMD FDALRHNLRV RSGEALAVSV
301: ALQLHRLLAA DDTGGKRQGG LTPLQIIARS SPSSFGELLE RELNTRLQLS PDASAFSSMS PQSPIGGHFP AGAGGQQRPK IGSFLSAVKA LSPKIMVVTE
401: QEANHNGAAF HERFDEALNY YASLFDCLER AAAAQRGSAA AERARVERSV LGDEIRSIVA CEGGERKERH ERARQWAGRM EAAGMEHVGL SYSGAMEARK
501: LLQSCGWGGY EVRHDAEGHC FFLCWHKKPL YAVTAWRPAG YHHSGGARSR
101: CASEVAAGAL DRANLCLEHI MQLASLDAPH TLQRLAAVFA DALARKLLNL VPGLSRALLS ASSADDAHLV PAARRHMFDM LPFLKLAYLT TNHAILEAME
201: GERFVHVVDL SGPAANPAQW IALFHAFRGR RDGTPNLRIT AVHESKEFLA GMSAVLVREA EAFDIPFQFN AVEARLEDMD FDALRHNLRV RSGEALAVSV
301: ALQLHRLLAA DDTGGKRQGG LTPLQIIARS SPSSFGELLE RELNTRLQLS PDASAFSSMS PQSPIGGHFP AGAGGQQRPK IGSFLSAVKA LSPKIMVVTE
401: QEANHNGAAF HERFDEALNY YASLFDCLER AAAAQRGSAA AERARVERSV LGDEIRSIVA CEGGERKERH ERARQWAGRM EAAGMEHVGL SYSGAMEARK
501: LLQSCGWGGY EVRHDAEGHC FFLCWHKKPL YAVTAWRPAG YHHSGGARSR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.