Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G382800.1 | Wheat | cytosol | 96.71 | 96.71 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 96.48 | 96.71 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 96.95 | 96.27 |
| Os06t0610350-01 | Rice | cytosol | 83.1 | 80.27 |
| Zm00001d046783_P001 | Maize | mitochondrion | 79.34 | 74.12 |
| OQU76691 | Sorghum | cytosol, extracellular | 79.34 | 72.22 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 60.33 | 57.62 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 43.66 | 50.41 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 44.6 | 49.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 44.37 | 49.48 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 42.96 | 48.28 |
| VIT_19s0015g01930.t01 | Wine grape | cytosol | 45.77 | 47.22 |
| Solyc07g066250.1.1 | Tomato | nucleus | 42.25 | 42.06 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 42.49 | 42.0 |
| CDY50028 | Canola | nucleus, plastid | 39.44 | 40.29 |
| CDY54362 | Canola | plastid | 39.67 | 40.14 |
| AT1G55580.1 | Thale cress | plastid | 39.91 | 38.2 |
| Bra038002.1-P | Field mustard | nucleus, plastid | 39.67 | 38.15 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 14.79 | 35.2 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 20.19 | 27.3 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 20.19 | 27.3 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.43 | 26.92 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 27.7 | 25.27 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 27.0 | 24.84 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 27.0 | 24.01 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 19.72 | 23.8 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 29.34 | 23.32 |
| HORVU3Hr1G058100.1 | Barley | plastid | 30.05 | 22.74 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 30.75 | 22.39 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 24.41 | 21.89 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 28.4 | 21.88 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 29.34 | 20.23 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 26.06 | 20.18 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 21.13 | 20.18 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 26.53 | 20.07 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 24.18 | 19.4 |
Protein Annotations
| MapMan:15.5.12 | EMBL:AK364492 | UniProt:F2DKS4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010014 | GO:GO:0010223 |
| EnsemblPlantsGene:HORVU7Hr1G091000 | EnsemblPlants:HORVU7Hr1G091000.1 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF2 | InterPro:Scarecrow-like_18/MOC1 | InterPro:TF_GRAS | UniParc:UPI0002006649 | SEG:seg | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKS4]
Coordinates
chrchr7H:+:555109073..555110524
Molecular Weight (calculated)
45232.7 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.022
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGSLHSSSS SDTDNNNSNA DLRNSSGEGE GDAAFLAAGE RALAAAPSTR DLVLACADLL QRGDLAAARR AAEILLSAAS PRGDATDRLA YHFARALVLR
101: VDAKAGLPFS PRPPTGTAPA PSGAYLAFNQ IAPFLRFAHL TANQAILEAV EGSRRVHIVD LDAAHGVQWP PLLQAIAERA DPALGPPEVR ITGAGADRDT
201: LLRTGNRLRA FARSIQLPFH FTPLLLSCAA STHHVAGTST TPSTAVTSLE IRPDETLAVN CVLFLHKLGG QDELAAFLKW VKAMAPAVVT VAEREASGGG
301: IDPIDELPRR VGVAMDHYSA VFEALEATVP PGSRERLAVE QEVLGREIEA AVGSTGGRWW RGLERWATAA RGTGFAARPL SAFAVSQARL LLRLHYPSEG
401: YLVQESRGAC FLGWQTRPLL SVSAWQ
101: VDAKAGLPFS PRPPTGTAPA PSGAYLAFNQ IAPFLRFAHL TANQAILEAV EGSRRVHIVD LDAAHGVQWP PLLQAIAERA DPALGPPEVR ITGAGADRDT
201: LLRTGNRLRA FARSIQLPFH FTPLLLSCAA STHHVAGTST TPSTAVTSLE IRPDETLAVN CVLFLHKLGG QDELAAFLKW VKAMAPAVVT VAEREASGGG
301: IDPIDELPRR VGVAMDHYSA VFEALEATVP PGSRERLAVE QEVLGREIEA AVGSTGGRWW RGLERWATAA RGTGFAARPL SAFAVSQARL LLRLHYPSEG
401: YLVQESRGAC FLGWQTRPLL SVSAWQ
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
Arabidopsis Description
SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.