Factsheet for PGSC0003DMT400057265

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066250.1.1	Tomato	nucleus	98.14	98.83
VIT_19s0015g01930.t01	Wine grape	cytosol	66.13	69.01
GSMUA_AchrUn_...	Banana	cytosol	51.04	57.59
GSMUA_Achr1P19470_001	Banana	nucleus	50.12	56.4
GSMUA_Achr1P09360_001	Banana	cytosol	47.56	55.56
CDY50028	Canola	nucleus, plastid	50.58	52.28
GSMUA_Achr7P16880_001	Banana	cytosol	45.94	52.24
CDY54362	Canola	plastid	50.35	51.54
AT1G55580.1	Thale cress	plastid	51.28	49.66
Bra038002.1-P	Field mustard	nucleus, plastid	50.81	49.44
TraesCS6A01G159500.1	Wheat	cytosol	41.07	45.15
TraesCS6D01G153000.1	Wheat	cytosol	41.3	45.06
KXG29713	Sorghum	cytosol	41.07	44.58
TraesCS6B01G191800.1	Wheat	cytosol	40.6	44.3
TraesCS7A01G382800.1	Wheat	cytosol	42.23	42.72
HORVU7Hr1G091000.1	Barley	cytosol	42.0	42.49
TraesCS7D01G379200.1	Wheat	cytosol	41.76	42.35
TraesCS7B01G285500.1	Wheat	cytosol	42.0	42.19
Zm00001d015815_P001	Maize	cytosol	40.14	41.59
Os06t0610350-01	Rice	cytosol	41.3	40.36
PGSC0003DMT400052191	Potato	cytosol	34.8	40.0
Zm00001d046783_P001	Maize	mitochondrion	41.53	39.25
HORVU6Hr1G033280.1	Barley	cytosol	40.6	39.24
Os02t0197300-00	Rice	cytosol	39.91	38.56
OQU76691	Sorghum	cytosol, extracellular	41.76	38.46
PGSC0003DMT400030652	Potato	cytosol	29.47	30.9
PGSC0003DMT400023877	Potato	cytosol	26.22	27.43
PGSC0003DMT400011839	Potato	cytosol	29.0	26.71
PGSC0003DMT400058477	Potato	cytosol	29.0	26.48
PGSC0003DMT400087504	Potato	nucleus	28.77	25.51
PGSC0003DMT400049448	Potato	nucleus	28.31	23.92
PGSC0003DMT400039455	Potato	cytosol	28.31	22.89
PGSC0003DMT400040589	Potato	nucleus	30.86	22.62
PGSC0003DMT400038574	Potato	cytosol	32.02	22.59
PGSC0003DMT400007879	Potato	plastid	32.71	20.77
PGSC0003DMT400049445	Potato	cytosol	19.95	20.43
PGSC0003DMT400043358	Potato	cytosol	31.55	16.46

Protein Annotations

EntrezGene:102588337	MapMan:15.5.12	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010223	InterPro:IPR005202	UniProt:M1C0Q7
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400022244	PGSC:PGSC0003DMG400022244	EnsemblPlants:PGSC0003DMT400057265	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF2	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI000294B0F5	RefSeq:XP_006346062.1	SEG:seg

Description

Lateral suppressor [Source:PGSC_GENE;Acc:PGSC0003DMG400022244]

Coordinates

chr7:+:56306445..56307740

Molecular Weight (calculated)

48913.1 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.290

Length

431 amino acids

Sequence
(BLAST)

001: MLGSFGSSSS QSHPHHDEES SDHHQRRRFT ATTTTITTTT TTTSPAIQIR QLLISCAELI SRSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR
101: LNRYISSTTN HFMTPVETTP TDSSSSLPSS SLALIQSSYL SLNQVTPFIR FTQLTANQAI LEAINGNHQA IHIVDFDINH GVQWPPLMQA LADRYPAPTL
201: RITGTGNDLD TLRRTGDRLA KFAHSLGLRF QFHPLYIANN NRDHDEDPSI ISSIVLLPDE TLAINCVFYL HRLLKDREKL RIFLHRVKSM NPKIVTIAEK
301: EANHNHPLFL QRFIEALDYY TAVFDSLEAT LPPGSRERMT VEQVWFGREI VDIVAMEGDK RKERHERFRS WEVMLRSCGF SNVALSPFAL SQAKLLLRLH
401: YPSEGYQLGV SSNSFFLGWQ NQPLFSISSW R

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.