Factsheet for PGSC0003DMT400038574

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT5G66770.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT5G66770.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085340.1.1	Tomato	cytosol	96.56	96.88
KRH29015	Soybean	cytosol	32.24	69.12
KRH24039	Soybean	cytosol	51.72	65.7
VIT_04s0023g01660.t01	Wine grape	cytosol	64.81	64.6
Bra012102.1-P	Field mustard	cytosol	17.51	63.69
AT5G66770.1	Thale cress	cytosol	58.76	61.47
CDY53846	Canola	cytosol	56.63	59.35
AT3G50650.1	Thale cress	cytosol	52.37	59.04
CDY72338	Canola	cytosol	56.3	58.8
GSMUA_Achr3P30530_001	Banana	cytosol	51.55	54.59
GSMUA_AchrUn_...	Banana	cytosol	47.46	54.21
Zm00001d033834_P001	Maize	cytosol, plastid	45.01	49.91
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	45.34	49.55
GSMUA_Achr4P07320_001	Banana	cytosol	45.34	49.38
Zm00001d013385_P001	Maize	cytosol, plastid	45.83	49.21
TraesCS4B01G054000.1	Wheat	cytosol	44.03	49.18
TraesCS4A01G260600.1	Wheat	cytosol	43.7	48.99
TraesCS4D01G054000.1	Wheat	cytosol	43.7	48.55
Os03t0723000-01	Rice	nucleus	45.5	48.1
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	25.2	43.63
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	35.52	39.24
PGSC0003DMT400052191	Potato	cytosol	22.59	36.8
PGSC0003DMT400057265	Potato	nucleus, plastid	22.59	32.02
PGSC0003DMT400030652	Potato	cytosol	19.48	28.95
PGSC0003DMT400023877	Potato	cytosol	19.31	28.64
PGSC0003DMT400087504	Potato	nucleus	22.26	27.98
PGSC0003DMT400011839	Potato	cytosol	19.64	25.64
PGSC0003DMT400058477	Potato	cytosol	19.48	25.21
PGSC0003DMT400049448	Potato	nucleus	19.8	23.73
PGSC0003DMT400040589	Potato	nucleus	21.93	22.79
PGSC0003DMT400039455	Potato	cytosol	19.48	22.33
PGSC0003DMT400049445	Potato	cytosol	14.89	21.62
PGSC0003DMT400007879	Potato	plastid	22.91	20.62
PGSC0003DMT400043358	Potato	cytosol	23.08	17.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400038574	EnsemblPlantsGene:PGSC0003DMG400014900	EntrezGene:102604465	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400014900
RefSeq:XP_006340610.1	SEG:seg	UniParc:UPI000296EDFF	UniProt:M1B742	MapMan:15.5.12	:

Description

Chitin-inducible gibberellin-responsive protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014900]

Coordinates

chr2:-:40546545..40549653

Molecular Weight (calculated)

66714.5 Da

IEP (calculated)

4.559

GRAVY (calculated)

-0.246

Length

611 amino acids

Sequence
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ QFLGVNPLCL SPWTSTTHQT LTNSPTLGYG LTGAGFADPF QVAGGTDGGE PGFQFPNLEH
101: HSTGFRFADF GGGPGGEFDS DEWMESLIGG GDSTGSSNLQ SGCEAWQTSS EFTTLYGDPF SSCPNRLSIG SSPPPPPSSD LNGVIFSETQ KNLNSLQPQT
201: SPWVAPSSSP PPIVQPVCKE SKVVSVDVLP CSSPESFSSK PLLKSLVECA RLAESEPENV VKSLIRLRES VSQQGDPMER VGFYFLEALY NGLSSCQAER
301: TPSIFGTTPE ELTLSYKAFN DACPYSKFAH LTANQAILEA TEKATRIHIV DFGIVHGIQW AAFLQALATR SAGKPVSVRI SGIPSVVLGN SPAASLLATG
401: NRLRDFAKLL DLNFEFEPIL TPVQELNGSS FRIDPDEILA VNFMLQLYNL LDETNVGVET ALSLAKSLNP SIVTLGEYEV NLNDVGFLQR FKNALKYYST
501: VFESLDPSLT RDSPERVQVE RLILGRRIAG AVGLDDGGTR RECMEDKEHW RELMEGAGFK PVTLSHYAMS QAKILLWNYN YSSSFGLIDS APGFLSLAWK
601: DNPLLTVSSW H

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.