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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:mitochondrion, nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
TargetP:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66770.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT5G66770.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT5G66770.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT5G66770.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT5G66770.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT5G66770.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT5G66770.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT5G66770.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT5G66770.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT5G66770.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G008930.3 Barley cytosol, mitochondrion 45.21 70.82
TraesCS4D01G054000.1 Wheat cytosol 67.63 68.0
TraesCS4B01G054000.1 Wheat cytosol 67.09 67.82
TraesCS4A01G260600.1 Wheat cytosol 66.73 67.71
KXG37683 Sorghum cytosol, mitochondrion, peroxisome, plastid 60.4 59.75
Zm00001d033834_P001 Maize cytosol, plastid 59.31 59.53
Zm00001d013385_P001 Maize cytosol, plastid 60.76 59.05
Os03t0723000-01 Rice nucleus 60.22 57.61
KRH29015 Soybean cytosol 28.93 56.14
Bra012102.1-P Field mustard cytosol 16.64 54.76
GSMUA_AchrUn_... Banana cytosol 40.14 41.5
GSMUA_Achr3P30530_001 Banana cytosol 43.04 41.25
KRH24039 Soybean cytosol 35.26 40.54
GSMUA_Achr4P07320_001 Banana cytosol 40.14 39.57
AT3G50650.1 Thale cress cytosol 37.43 38.19
AT5G66770.1 Thale cress cytosol 39.24 37.16
CDY53846 Canola cytosol 38.7 36.71
CDY72338 Canola cytosol 38.34 36.24
HORVU3Hr1G106260.1 Barley cytosol 11.57 35.75
PGSC0003DMT400038574 Potato cytosol 39.24 35.52
Solyc02g085340.1.1 Tomato cytosol 38.88 35.3
VIT_04s0023g01660.t01 Wine grape cytosol 37.79 34.09
HORVU3Hr1G088820.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 13.56 28.85
HORVU7Hr1G091000.1 Barley cytosol 21.88 28.4
HORVU6Hr1G033280.1 Barley cytosol 21.7 26.91
HORVU2Hr1G113490.1 Barley cytosol 14.83 26.03
HORVU2Hr1G113480.1 Barley cytosol 14.83 26.03
HORVU0Hr1G004640.1 Barley mitochondrion, nucleus, plastid 20.61 23.8
HORVU0Hr1G003230.2 Barley mitochondrion 19.35 23.11
HORVU1Hr1G069140.1 Barley cytosol 18.99 22.48
HORVU3Hr1G058100.1 Barley plastid 22.6 22.2
HORVU7Hr1G010620.1 Barley cytosol 22.24 21.85
HORVU5Hr1G045920.2 Barley cytosol 22.6 21.37
HORVU1Hr1G090800.1 Barley mitochondrion 20.25 20.9
HORVU4Hr1G006930.1 Barley nucleus 23.33 20.87
HORVU2Hr1G113360.1 Barley cytosol 17.72 20.63
HORVU5Hr1G043310.1 Barley cytosol 20.43 20.55
HORVU4Hr1G026010.3 Barley cytosol 16.09 19.96
HORVU3Hr1G088780.2 Barley cytosol 17.9 18.64
Protein Annotations
EnsemblPlants:HORVU4Hr1G008980.3EnsemblPlantsGene:HORVU4Hr1G008980GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF65PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000B4813E6UniProt:A0A287N4U1
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr4H:+:25658574..25660462
Molecular Weight (calculated)
57882.7 Da
IEP (calculated)
11.321
GRAVY (calculated)
-0.341
Length
553 amino acids
Sequence
(BLAST)
001: GVHVRRQRQP HGHRAAGDPA AAAAAXXXXX XXXXXXXXXX XXXXXXXXXX XAAAAPPPPP PTAAARADAD AGAPARADPA VRRRGVAPGR TLFPGRVWLL
101: RRRRRRRLLR PPRRRRLRLR RLDGEPHRGR PRVPGLRPRP PHLQRPAAAR PAPGRRGGRC RRTGRGCAGL ATHGCCRRGA GGVLFPGRSR RVLLRPHRPV
201: PPRXRAAATE SGDPAERVAF YFSDALARRL ACRGAARAPL DTASSDARLA SDEVTLCYKT LNDACPYSKF AHLTANQAIL EATGAATKIH IVDFGIVHGI
301: QWAALLQALA TRPEGKPSRI RISGVPSPYL GPQPAASLAA TSARLRDFAQ LLGVDFEFVP LLRPVHELDL SDFSVEPDEV VAVNFMLQLY HLLGDSDEPV
401: RRVLRLAKSL GPAVVTLGEY EVSLNRAGFV DRFASALSYY RCVFESLDVA MARDSEDRLT LERCMFGERI RRAVGPPEGA DRKDRMAGSG EWQALMEWCG
501: FEPVRLSNYA ESQAELLLWD YDSKYKYSLV ELPPAFLSLA WDKRPLLTVS AWR
Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.