Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 78.72 | 81.4 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 76.99 | 81.35 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 76.64 | 81.28 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 76.99 | 80.91 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 79.41 | 80.67 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 76.64 | 80.4 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 57.61 | 60.22 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 36.51 | 59.77 |
| KRH29015 | Soybean | cytosol | 28.37 | 57.54 |
| Bra012102.1-P | Field mustard | cytosol | 16.26 | 55.95 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.4 | 51.22 |
| KRH24039 | Soybean | cytosol | 42.21 | 50.73 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 50.0 | 50.09 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 45.85 | 47.24 |
| AT5G66770.1 | Thale cress | cytosol | 47.58 | 47.09 |
| AT3G50650.1 | Thale cress | cytosol | 43.77 | 46.68 |
| CDY53846 | Canola | cytosol | 46.02 | 45.63 |
| PGSC0003DMT400038574 | Potato | cytosol | 48.1 | 45.5 |
| Solyc02g085340.1.1 | Tomato | cytosol | 47.75 | 45.32 |
| CDY72338 | Canola | cytosol | 45.5 | 44.96 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 45.33 | 42.74 |
| Os01t0948200-00 | Rice | cytosol | 23.7 | 31.0 |
| Os06t0211500-00 | Rice | cytosol | 10.03 | 30.37 |
| Os06t0610350-01 | Rice | cytosol | 22.49 | 29.48 |
| Os01t0646300-01 | Rice | cytosol | 24.74 | 28.89 |
| Os02t0197300-00 | Rice | cytosol | 21.11 | 27.35 |
| Os07t0567700-02 | Rice | cytosol | 21.45 | 27.13 |
| Os04t0432100-00 | Rice | nucleus | 22.49 | 25.79 |
| Os12t0138100-00 | Rice | cytosol | 21.63 | 25.41 |
| Os11t0141500-00 | Rice | cytosol | 21.28 | 25.0 |
| Os05t0574900-01 | Rice | plasma membrane | 21.45 | 24.8 |
| Os03t0707600-01 | Rice | nucleus | 25.26 | 23.36 |
| Os05t0485400-00 | Rice | peroxisome | 19.55 | 22.6 |
| Os11t0124300-01 | Rice | nucleus, plastid | 24.91 | 22.12 |
| Os12t0122000-01 | Rice | plastid | 25.09 | 21.97 |
| Os12t0138200-00 | Rice | cytosol | 19.38 | 21.96 |
| Os11t0141700-00 | Rice | cytosol | 19.03 | 21.74 |
| Os05t0378500-00 | Rice | plastid | 20.42 | 21.07 |
| Os06t0127800-01 | Rice | plastid | 22.49 | 21.07 |
| Os05t0378200-00 | Rice | cytosol | 18.34 | 19.24 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 2.94 | 4.82 |
| Os11t0141550-01 | Rice | cytosol | 0.17 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:4333948 | PDB:5HYZ | ProteinID:AAX95685.1 | ProteinID:ABF98609.1 | EMBL:AK064022 |
| EMBL:AK101603 | EMBL:AK102857 | ProteinID:BAF13029.1 | ProteinID:BAS86141.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | EnsemblPlantsGene:Os03g0723000 | EnsemblPlants:Os03t0723000-01 |
| PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF65 | UniProt:Q53K16 | InterPro:TF_GRAS |
| UniParc:UPI00003E1FF7 | RefSeq:XP_015628849.1 | SEG:seg | : | : | : |
Description
SCARECROW-LIKE7, SCARECROW-LIKE 7GRAS transcription factor domain containing protein. (Os03t0723000-01);GRAS transcription factor domain containing protein. (Os03t0723000-02)
Coordinates
chr3:+:29370719..29372888
Molecular Weight (calculated)
62480.8 Da
IEP (calculated)
5.954
GRAVY (calculated)
-0.209
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHHLPP PPPPQSMAPH HHQQKHHHHH QQMPAMPQAP PSSHGQIPGQ LAYGGGAAWP AGEHFFADAF
101: GASAGDAVFS DLAAAADFDS DGWMESLIGD APFQDSDLER LIFTTPPPPV PSPPPTHAAA TATATAATAA PRPEAAPALL PQPAAATPVA CSSPSPSSAD
201: ASCSAPILQS LLSCSRAAAT DPGLAAAELA SVRAAATDAG DPSERLAFYF ADALSRRLAC GTGAPPSAEP DARFASDELT LCYKTLNDAC PYSKFAHLTA
301: NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPTRIRITGV PSPLLGPQPA ASLAATNTRL RDFAKLLGVD FEFVPLLRPV HELNKSDFLV
401: EPDEAVAVNF MLQLYHLLGD SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSLFE SLDVAMTRDS PERVRVERWM FGERIQRAVG
501: PEEGADRTER MAGSSEWQTL MEWCGFEPVP LSNYARSQAD LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR
101: GASAGDAVFS DLAAAADFDS DGWMESLIGD APFQDSDLER LIFTTPPPPV PSPPPTHAAA TATATAATAA PRPEAAPALL PQPAAATPVA CSSPSPSSAD
201: ASCSAPILQS LLSCSRAAAT DPGLAAAELA SVRAAATDAG DPSERLAFYF ADALSRRLAC GTGAPPSAEP DARFASDELT LCYKTLNDAC PYSKFAHLTA
301: NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPTRIRITGV PSPLLGPQPA ASLAATNTRL RDFAKLLGVD FEFVPLLRPV HELNKSDFLV
401: EPDEAVAVNF MLQLYHLLGD SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSLFE SLDVAMTRDS PERVRVERWM FGERIQRAVG
501: PEEGADRTER MAGSSEWQTL MEWCGFEPVP LSNYARSQAD LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.