Factsheet for Os06t0127800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045507_P001	Maize	plastid	80.23	80.36
HORVU7Hr1G010620.1	Barley	cytosol	72.12	79.04
EER87757	Sorghum	mitochondrion	80.88	78.34
TraesCS7D01G053600.1	Wheat	plastid	77.96	76.71
TraesCS7A01G059000.1	Wheat	plastid	77.8	76.56
TraesCS4A01G430600.1	Wheat	plastid	76.82	76.33
GSMUA_Achr1P16230_001	Banana	cytosol	35.33	61.24
GSMUA_Achr7P05850_001	Banana	mitochondrion	50.73	48.15
GSMUA_Achr1P18840_001	Banana	cytosol	46.19	46.42
VIT_02s0025g04000.t01	Wine grape	plastid	46.52	43.75
Solyc08g080400.1.1	Tomato	plastid	46.52	42.27
PGSC0003DMT400007879	Potato	plastid	46.52	42.27
KRH57249	Soybean	plastid	43.27	40.21
Bra026999.1-P	Field mustard	nucleus, plastid	39.22	40.13
CDY49199	Canola	plastid	41.0	40.03
Bra027620.1-P	Field mustard	plastid	40.84	39.87
AT1G63100.2	Thale cress	plastid	42.46	39.82
CDY47352	Canola	plastid	40.84	39.56
KRH03976	Soybean	mitochondrion, nucleus	42.79	39.46
CDY45974	Canola	plastid	40.84	39.07
CDY70213	Canola	plastid	40.68	39.04
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.27	35.27
Os01t0948200-00	Rice	cytosol	21.56	30.09
Os01t0646300-01	Rice	cytosol	23.82	29.7
Os07t0567700-02	Rice	cytosol	21.72	29.32
Os12t0138100-00	Rice	cytosol	21.39	26.83
Os05t0485400-00	Rice	peroxisome	21.72	26.8
Os11t0141500-00	Rice	cytosol	21.23	26.63
Os06t0610350-01	Rice	cytosol	18.96	26.53
Os02t0197300-00	Rice	cytosol	19.12	26.46
Os05t0574900-01	Rice	plasma membrane	21.39	26.4
Os11t0141700-00	Rice	cytosol	20.1	24.51
Os04t0432100-00	Rice	nucleus	19.77	24.21
Os12t0138200-00	Rice	cytosol	19.77	23.92
Os03t0707600-01	Rice	nucleus	23.34	23.04
Os11t0124300-01	Rice	nucleus, plastid	23.99	22.73
Os06t0211500-00	Rice	cytosol	6.97	22.51
Os03t0723000-01	Rice	nucleus	21.07	22.49
Os12t0122000-01	Rice	plastid	23.99	22.42
Os05t0378200-00	Rice	cytosol	18.48	20.69
Os05t0378500-00	Rice	plastid	17.99	19.82
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	3.73	6.52
Os11t0141550-01	Rice	cytosol	0.49	2.33

Protein Annotations

MapMan:15.5.12	EntrezGene:4339978	ProteinID:BAA90816.1	ProteinID:BAC24836.1	ProteinID:BAF18581.1	ProteinID:BAS95938.1
ProteinID:EAZ35680.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009742	GO:GO:0009987	GO:GO:0043565	GO:GO:1900459
InterPro:IPR005202	EMBL:JX310319	EnsemblPlantsGene:Os06g0127800	EnsemblPlants:Os06t0127800-01	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	UniProt:Q9LWU9	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI00000A9E95
RefSeq:XP_015642886.1	RefSeq:XP_015642887.1	SEG:seg	:	:	:

Description

DWARF AND LOW-TILLERINGGAI-RGA-SCR (GRAS) family protein, Brassinosteroid signaling (Os06t0127800-01)

Coordinates

chr6:-:1465500..1468583

Molecular Weight (calculated)

65850.5 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.331

Length

617 amino acids

Sequence
(BLAST)

001: MLAGCSFSSS RHQMSTAQRF DILPCGFSKR GSRGDGAAPR VAGDARSGAT TCSFRTHPAP PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI
101: VRAKRTRMGG DGDEVWFHQS IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS GTDGGSSAMM PPPQPPEFDA
201: RNGVPAPGQA EREALELVRA LTACADSLSA GNHEAANYYL ARLGEMASPA GPTPMHRVAA YFTEALALRV VRMWPHMFDI GPPRELTDDA FGGGDDDAMA
301: LRILNAITPI PRFLHFTLNE RLLREFEGHE RVHVIDFDIK QGLQWPGLLQ SLAARAVPPA HVRITGVGES RQELQETGAR LARVAAALGL AFEFHAVVDR
401: LEDVRLWMLH VKRGECVAVN CVLAMHRLLR DDAALTDFLG LARSTGATIL LLGEHEGGGL NSGRWEARFA RALRYYAAAF DAVDAAGLPE ASPARAKAEE
501: MFAREIRNAV AFEGPERFER HESFAGWRRR MEDGGGFKNA GIGEREAMQG RMIARMFGPD KYTVQAHGGG GSGGGEALTL RWLDQPLYTV TAWTPAGDGA
601: GGSTVSASTT ASHSQQS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.