Factsheet for GSMUA_Achr4P19750_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05850_001	Banana	mitochondrion	58.0	76.92
GSMUA_Achr1P16230_001	Banana	cytosol	30.51	73.88
GSMUA_Achr1P18840_001	Banana	cytosol	48.96	68.73
VIT_02s0025g04000.t01	Wine grape	plastid	38.86	51.07
Os06t0127800-01	Rice	plastid	35.27	49.27
Solyc08g080400.1.1	Tomato	plastid	38.4	48.75
PGSC0003DMT400007879	Potato	plastid	38.28	48.6
HORVU7Hr1G010620.1	Barley	cytosol	31.44	48.13
TraesCS4A01G430600.1	Wheat	plastid	33.99	47.18
TraesCS7D01G053600.1	Wheat	plastid	33.64	46.25
KRH57249	Soybean	plastid	35.5	46.08
Zm00001d045507_P001	Maize	plastid	32.83	45.94
TraesCS7A01G059000.1	Wheat	plastid	33.29	45.77
KRH03976	Soybean	mitochondrion, nucleus	34.8	44.84
EER87757	Sorghum	mitochondrion	32.95	44.58
CDY49199	Canola	plastid	32.48	44.3
Bra027620.1-P	Field mustard	plastid	32.25	43.99
CDY47352	Canola	plastid	32.37	43.8
AT1G63100.2	Thale cress	plastid	33.06	43.31
CDY70213	Canola	plastid	32.02	42.92
CDY45974	Canola	plastid	31.9	42.64
Bra026999.1-P	Field mustard	nucleus, plastid	29.81	42.62
GSMUA_AchrUn_...	Banana	cytosol	15.2	34.29
GSMUA_Achr1P19470_001	Banana	nucleus	14.62	32.9
GSMUA_Achr7P16880_001	Banana	cytosol	14.27	32.45
GSMUA_Achr8P09690_001	Banana	cytosol	16.01	30.94
GSMUA_Achr1P09360_001	Banana	cytosol	12.99	30.35
GSMUA_Achr8P01180_001	Banana	nucleus	15.66	29.54
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	16.01	29.18
GSMUA_Achr10P...	Banana	cytosol	15.31	27.62
GSMUA_Achr8P18250_001	Banana	cytosol	15.31	27.56
GSMUA_Achr6P20830_001	Banana	nucleus	18.79	26.56
GSMUA_AchrUn_...	Banana	cytosol	16.47	26.54
GSMUA_Achr10P...	Banana	nucleus	13.46	26.42
GSMUA_Achr6P17870_001	Banana	cytosol	13.57	26.23
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	9.28	25.97
GSMUA_Achr3P30530_001	Banana	cytosol	16.71	24.96
GSMUA_Achr4P07320_001	Banana	cytosol	16.24	24.96
GSMUA_Achr11P...	Banana	plastid	16.36	24.56
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	16.94	23.9
GSMUA_Achr8P09400_001	Banana	cytosol	18.33	23.51
GSMUA_Achr1P21300_001	Banana	nucleus	13.92	23.26
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	17.63	21.5
GSMUA_Achr11P...	Banana	cytosol	16.01	12.52

Protein Annotations

MapMan:15.5.12	Gene3D:3.30.40.10	InterPro:Apc11	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G19750_001	EnsemblPlants:GSMUA_Achr4P19750_001
EnsemblPlants:GSMUA_Achr4T19750_001	InterPro:IPR001841	InterPro:IPR005202	InterPro:IPR013083	UniProt:M0SQD8	PFAM:PF03514
PFAM:PF12861	PFscan:PS50089	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	SMART:SM00184
SUPFAM:SSF57850	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI0002948F70	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative Scarecrow-like protein 28 [Source:GMGC_GENE;Acc:GSMUA_Achr4G19750_001]

Coordinates

chr4:-:20599095..20609003

Molecular Weight (calculated)

96588.9 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.518

Length

862 amino acids

Sequence
(BLAST)

001: MLAGCSSTLL SPRHKLRIDA SVQLQSCHFQ LQDKHCHPQQ KMGTQRLDLP CGFSSRKDPL RMALSVEKPP PAEARRSSCS FRRNPVTTSS MAAQTPSWGG
101: IDEGHGRPWD RRRSLKRFHE RGSCDDDRAK RTRTGGGVSG LVEVDGEVWF PRSTQEPPPV EEDKVFLVPN AASFPLPAST SHALSDSSTS STAYASSPEP
201: TKDSSGNGSS AEQQGLELLS LLTSCAESIS SGNYEGMTFF LARLGETATP LGTPLHRVVA YYTEALALRV VKLRPHIFSI APPKTLVHPT EDDDAVALRL
301: LNCVTPVLKF LHFTMNERLL KAFEGRDRVH IIDLDIKQGL QWPSLLQSLA SRPSPPSHLR ITGVGESRQD LQDTGAALAR LAESLNLPFE FHAVADRLED
401: VRLWMLHVKR EECVAVNCVL TMHKALSDES GKAFMDLLGL IRSTRPEIVV MAEQEAKHNE PNWETRFSRS LSYYAAIFDS MDYALPRDSP ARIKVEQVFA
501: REIRNAVACE GGERTERHEN FDRWRKLMED GGFKCLGIGE REMLQSRMIL RMYSCDKYAI DNQGEEGDGL TLRWSDQPLY TVSAWAPTDV AGGSSTKRAE
601: RLTREEDPSD KNRGGPLIKV AIMTMEHQIV EKQDVTIHRL HTTVPNVSEE ISEEFLLDFD DLAVQEIVYQ SFQKNPHEHQ CHASVNESRS NHEIGQSSHG
701: GSSSVTTDIL LQFTSDEAIA QQYEILDNLP ADASFSALNQ SEAAENISDQ MSGGSSSADS PGQDTRQDSI DPDQMSYEQL QSLEEEMGNE SRGLSDELIS
801: YLRDLKHKCG FFSKGKNEEC VICKMNYRRE WLITLPCKHC YHSHCIIRWL EDNKVRCYMT LL

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.