Factsheet for GSMUA_Achr6P20830_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052191	Potato	cytosol	40.66	66.13
OQU83473	Sorghum	cytosol	42.62	61.61
KRG94590	Soybean	plastid	56.56	50.66
VIT_14s0068g01610.t01	Wine grape	plastid	55.41	50.6
KRH06900	Soybean	plastid	55.74	49.56
Solyc02g094340.1.1	Tomato	nucleus	52.46	47.06
TraesCS2D01G095300.1	Wheat	nucleus	52.46	44.76
TraesCS2B01G112100.1	Wheat	nucleus	52.46	44.76
TraesCS2A01G096800.1	Wheat	nucleus	52.3	44.62
Zm00001d049249_P001	Maize	plastid	55.57	43.74
GSMUA_Achr1P16230_001	Banana	cytosol	20.49	35.11
GSMUA_Achr8P01180_001	Banana	nucleus	25.74	34.35
GSMUA_Achr8P09690_001	Banana	cytosol	23.61	32.29
GSMUA_Achr1P09360_001	Banana	cytosol	19.51	32.25
GSMUA_AchrUn_...	Banana	cytosol	20.16	32.2
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.07	31.82
GSMUA_Achr1P19470_001	Banana	nucleus	19.67	31.33
GSMUA_Achr10P...	Banana	cytosol	24.43	31.17
GSMUA_Achr7P16880_001	Banana	cytosol	19.02	30.61
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	22.79	29.39
GSMUA_Achr8P18250_001	Banana	cytosol	22.95	29.23
GSMUA_AchrUn_...	Banana	cytosol	22.13	25.23
GSMUA_Achr6P17870_001	Banana	cytosol	18.36	25.11
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	24.92	24.88
GSMUA_Achr10P...	Banana	nucleus	17.54	24.37
GSMUA_Achr11P...	Banana	plastid	22.62	24.04
GSMUA_Achr3P30530_001	Banana	cytosol	22.46	23.74
GSMUA_Achr7P05850_001	Banana	mitochondrion	25.25	23.69
GSMUA_Achr1P21300_001	Banana	nucleus	20.0	23.64
GSMUA_Achr1P18840_001	Banana	cytosol	23.28	23.13
GSMUA_Achr4P07320_001	Banana	cytosol	20.66	22.46
GSMUA_Achr8P09400_001	Banana	cytosol	24.1	21.88
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	23.61	20.37
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	26.56	18.79
GSMUA_Achr11P...	Banana	cytosol	23.44	12.98

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20830_001	EnsemblPlants:GSMUA_Achr6T20830_001	EnsemblPlantsGene:GSMUA_Achr6G20830_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF3	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000296D9AA
UniProt:M0T8T1	MapMan:15.5.12	:	:	:	:

Description

gibberellin response modulator protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr6G20830_001]

Coordinates

chr6:-:15801317..15803582

Molecular Weight (calculated)

66367.2 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.250

Length

610 amino acids

Sequence
(BLAST)

001: MINNRCGSFG SLKSDNASSS KQGLPSPTTS AEESNVLTAS MTEEKDQSTL KGLKLDADID VEVQSPDRAL LESLFADQRE YMVSSPKREN MVSSPKRVGL
101: SPTHSHHNSF TYVRGMHGSP GLIQPSYYSS NLCKGKSQSP LHKVCNSSSS LYASCSSSTE LLHGESLALP AVDAFYWDYS RDGYEVCAMG AEFSSEALAA
201: PPMASLPSLL DCFVMESRYG NSANDMMAAG VQFSGEDDRY QQVGGGGAVQ HQEHGFLCAV GPNATSSTTT ATNTTKVEAS YHGLVGGSSA VVPTELEQEQ
301: DSGLQLVHLL LACAEATSKD DLVAARRYLH NLNHVVSPFG DSMQRAIFEA FESEDCVHVI DLDILQGYQW PAFLQALAAR PGGAPALRIT GVGHPADSVR
401: ETGRHLAELA HSLRVPFEFH AATVERLEDL RPSMLHRRVG EALAVNSVNR LHRVPGAHLG PLLAMIRDQA PKIFTLVEQE ASHNGPYFLG RFLEALHYYS
501: AIFDSLDATF PSDSAARAKV EQFLLAPEIR NIVACEGSER VARHERLERW RRVMEGRGFE GVALSANAVN QSKILLGLYP CDGYRLTEDK GCLLLGWQDR
601: PIIAASAWRC

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.