Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 84.86 | 85.08 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 67.1 | 69.65 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 67.36 | 68.07 |
| VIT_19s0015g01930.t01 | Wine grape | cytosol | 59.79 | 55.45 |
| Solyc07g066250.1.1 | Tomato | nucleus | 56.14 | 50.23 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 56.4 | 50.12 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 49.35 | 48.21 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 48.83 | 47.34 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 48.56 | 47.09 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 49.87 | 44.94 |
| CDY50028 | Canola | nucleus, plastid | 48.56 | 44.6 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 49.61 | 44.6 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 49.61 | 44.6 |
| KXG29713 | Sorghum | cytosol | 45.69 | 44.08 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 49.35 | 44.06 |
| CDY54362 | Canola | plastid | 48.3 | 43.94 |
| Os06t0610350-01 | Rice | cytosol | 49.61 | 43.08 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 49.35 | 42.38 |
| Bra038002.1-P | Field mustard | nucleus, plastid | 48.83 | 42.21 |
| AT1G55580.1 | Thale cress | plastid | 48.83 | 42.02 |
| Zm00001d046783_P001 | Maize | mitochondrion | 49.09 | 41.23 |
| OQU76691 | Sorghum | cytosol, extracellular | 49.61 | 40.6 |
| Os02t0197300-00 | Rice | cytosol | 47.0 | 40.36 |
| Zm00001d015815_P001 | Maize | cytosol | 42.82 | 39.42 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 28.2 | 30.34 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 32.11 | 27.58 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 30.55 | 25.6 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 31.33 | 25.37 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 20.1 | 25.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.46 | 24.67 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 28.46 | 24.44 |
| GSMUA_Achr10P... | Banana | nucleus | 26.63 | 23.23 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 33.94 | 22.53 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 32.38 | 22.1 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 27.42 | 21.92 |
| GSMUA_Achr10P... | Banana | cytosol | 24.8 | 19.87 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 31.33 | 19.67 |
| GSMUA_Achr11P... | Banana | plastid | 28.72 | 19.16 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 30.55 | 19.15 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 32.38 | 19.08 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 30.55 | 19.06 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 31.07 | 17.71 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 29.24 | 15.84 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 20.1 | 14.92 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 32.9 | 14.62 |
| GSMUA_Achr11P... | Banana | cytosol | 32.9 | 11.43 |
Protein Annotations
| MapMan:15.5.12 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010223 | EnsemblPlantsGene:GSMUA_Achr1G19470_001 | EnsemblPlants:GSMUA_Achr1P19470_001 | EnsemblPlants:GSMUA_Achr1T19470_001 |
| InterPro:IPR005202 | UniProt:M0S1A5 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF2 |
| InterPro:Scarecrow-like_18/MOC1 | InterPro:TF_GRAS | UniParc:UPI0002961CEC | SEG:seg | : | : |
Description
Putative Scarecrow-like protein 18 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19470_001]
Coordinates
chr1:-:14599307..14600545
Molecular Weight (calculated)
42829.6 Da
IEP (calculated)
7.065
GRAVY (calculated)
-0.321
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSLKSHEE GDQEHHRHSN PLHPNPQHGQ ISPSAHARQL LLSCAELAHR GDLPAAQRTA SLLLATASPY GDSTDRLVHQ FARALSLRVE RLLPPVVDAA
101: SPEALQSSYL SFNQITPFLR FAHLTANQAI LEARSDPKDP PSIRVTGTGS NLEVLRRTGD RLQTFADSLN LHFQFHPLLL PSTSSNPLSS TSADLTSSSF
201: QIHPGEILAV NCVLFLHKLL KDGGGSDGSH DLRAFLQAVR AMNPAVVTVA EREASHNSPI FLQRFTEALD YYTAVFESLE ATLPPTSRER VAVEQVWLSK
301: EIEDVVSREG DGRRERHERF EWWEALMRRA GFTNLPLSPF ALSQARLLLR LHYPSEGYQL QMVRDSFFLG WQKKSLFSVS SWH
101: SPEALQSSYL SFNQITPFLR FAHLTANQAI LEARSDPKDP PSIRVTGTGS NLEVLRRTGD RLQTFADSLN LHFQFHPLLL PSTSSNPLSS TSADLTSSSF
201: QIHPGEILAV NCVLFLHKLL KDGGGSDGSH DLRAFLQAVR AMNPAVVTVA EREASHNSPI FLQRFTEALD YYTAVFESLE ATLPPTSRER VAVEQVWLSK
301: EIEDVVSREG DGRRERHERF EWWEALMRRA GFTNLPLSPF ALSQARLLLR LHYPSEGYQL QMVRDSFFLG WQKKSLFSVS SWH
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
Arabidopsis Description
SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.