Factsheet for GSMUA_Achr1P16230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05850_001	Banana	mitochondrion	77.25	42.31
GSMUA_Achr1P18840_001	Banana	cytosol	72.19	41.86
HORVU7Hr1G010620.1	Barley	cytosol	58.43	36.94
VIT_02s0025g04000.t01	Wine grape	plastid	65.17	35.37
Os06t0127800-01	Rice	plastid	61.24	35.33
Zm00001d045507_P001	Maize	plastid	59.27	34.25
Solyc08g080400.1.1	Tomato	plastid	64.89	34.02
PGSC0003DMT400007879	Potato	plastid	64.61	33.87
KRH57249	Soybean	plastid	62.92	33.73
EER87757	Sorghum	mitochondrion	60.11	33.59
TraesCS4A01G430600.1	Wheat	plastid	58.43	33.49
Bra026999.1-P	Field mustard	nucleus, plastid	56.46	33.33
TraesCS7D01G053600.1	Wheat	plastid	58.43	33.17
TraesCS7A01G059000.1	Wheat	plastid	58.43	33.17
KRH03976	Soybean	mitochondrion, nucleus	61.8	32.88
CDY49199	Canola	plastid	56.18	31.65
Bra027620.1-P	Field mustard	plastid	55.9	31.49
CDY47352	Canola	plastid	56.18	31.4
CDY70213	Canola	plastid	56.46	31.26
CDY45974	Canola	plastid	56.46	31.16
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	73.88	30.51
AT1G63100.2	Thale cress	plastid	55.62	30.09
GSMUA_AchrUn_...	Banana	cytosol	30.34	28.27
GSMUA_Achr1P19470_001	Banana	nucleus	30.34	28.2
GSMUA_Achr8P09690_001	Banana	cytosol	34.27	27.35
GSMUA_Achr1P09360_001	Banana	cytosol	27.81	26.83
GSMUA_Achr7P16880_001	Banana	cytosol	27.81	26.12
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	34.55	26.0
GSMUA_Achr8P01180_001	Banana	nucleus	30.9	24.07
GSMUA_Achr10P...	Banana	nucleus	29.21	23.69
GSMUA_Achr6P17870_001	Banana	cytosol	29.21	23.32
GSMUA_Achr8P18250_001	Banana	cytosol	30.34	22.55
GSMUA_Achr10P...	Banana	cytosol	30.06	22.38
GSMUA_AchrUn_...	Banana	cytosol	31.74	21.12
GSMUA_Achr3P30530_001	Banana	cytosol	33.43	20.62
GSMUA_Achr6P20830_001	Banana	nucleus	35.11	20.49
GSMUA_Achr11P...	Banana	plastid	32.3	20.03
GSMUA_Achr4P07320_001	Banana	cytosol	31.18	19.79
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.85	19.48
GSMUA_Achr8P09400_001	Banana	cytosol	35.11	18.6
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	31.46	18.33
GSMUA_Achr1P21300_001	Banana	nucleus	25.84	17.83
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	33.43	16.83
GSMUA_Achr11P...	Banana	cytosol	34.83	11.25

Protein Annotations

EnsemblPlants:GSMUA_Achr1P16230_001	EnsemblPlants:GSMUA_Achr1T16230_001	EnsemblPlantsGene:GSMUA_Achr1G16230_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	UniParc:UPI0002958AD2
UniProt:M0S0D1	MapMan:15.5.12	:	:	:	:

Description

Scarecrow-like protein 28 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16230_001]

Coordinates

chr1:+:12135842..12136912

Molecular Weight (calculated)

40517.8 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.215

Length

356 amino acids

Sequence
(BLAST)

001: MATPMGTPVH RLVAYFTESL ALRVARLYPH IFTINAPPRR LIDASEEDDA TALQLLDLIS PIPKFLHFTL NEMLLKAFEG RDRVHVIDLD IKQGLQWPSL
101: LQSLASRPRP PSHVRITGVG ESRPDLHATG VRLARIAESL HLPFEFHPVV DRFEDLRLWM LHVKREECVA VSCSLMMHRA LHDESGKAFM DLLGLIRSTN
201: PATVVMAEQE AEHNEPDWGR RLARSLNHYA AIFDSLDDVL PQDSHARIKV EELFAKEIRN IVACEGDERI ERHESFQGWR RRMTQEGGFT CLGIGEREML
301: QSRMILRMYS CDKYSIDVEG EGHGLTLKWL HQPLYTVSAW VPVDVAGSSS AHLSQI

Best Arabidopsis Sequence Match ( AT1G63100.1 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.