Factsheet for GSMUA_Achr4P07320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30530_001	Banana	cytosol	70.59	68.63
GSMUA_AchrUn_...	Banana	cytosol	60.78	63.74
KRH29015	Soybean	cytosol	29.77	58.6
Bra012102.1-P	Field mustard	cytosol	16.58	55.36
KRH24039	Soybean	cytosol	44.03	51.35
TraesCS4A01G260600.1	Wheat	cytosol	48.13	49.54
TraesCS4B01G054000.1	Wheat	cytosol	48.13	49.36
TraesCS4D01G054000.1	Wheat	cytosol	47.77	48.73
Zm00001d033834_P001	Maize	cytosol, plastid	47.42	48.28
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	47.95	48.12
Zm00001d013385_P001	Maize	cytosol, plastid	47.42	46.75
AT5G66770.1	Thale cress	cytosol	48.13	46.23
Os03t0723000-01	Rice	nucleus	47.24	45.85
AT3G50650.1	Thale cress	cytosol	44.21	45.76
PGSC0003DMT400038574	Potato	cytosol	49.38	45.34
Solyc02g085340.1.1	Tomato	cytosol	49.02	45.16
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	27.63	43.91
CDY72338	Canola	cytosol	45.45	43.59
CDY53846	Canola	cytosol	45.1	43.4
VIT_04s0023g01660.t01	Wine grape	cytosol	47.24	43.23
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	39.57	40.14
GSMUA_Achr1P09360_001	Banana	cytosol	21.57	32.79
GSMUA_AchrUn_...	Banana	cytosol	22.1	32.46
GSMUA_Achr1P19470_001	Banana	nucleus	22.1	32.38
GSMUA_Achr1P16230_001	Banana	cytosol	19.79	31.18
GSMUA_Achr7P16880_001	Banana	cytosol	20.5	30.34
GSMUA_Achr6P17870_001	Banana	cytosol	21.39	26.91
GSMUA_Achr8P09690_001	Banana	cytosol	21.21	26.68
GSMUA_Achr10P...	Banana	nucleus	20.68	26.42
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	14.26	25.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	20.86	24.74
GSMUA_Achr8P18250_001	Banana	cytosol	21.03	24.63
GSMUA_Achr10P...	Banana	cytosol	20.14	23.64
GSMUA_Achr11P...	Banana	plastid	23.53	23.0
GSMUA_Achr8P01180_001	Banana	nucleus	18.72	22.98
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	24.06	22.09
GSMUA_Achr8P09400_001	Banana	cytosol	24.96	20.83
GSMUA_Achr1P18840_001	Banana	cytosol	22.64	20.68
GSMUA_Achr6P20830_001	Banana	nucleus	22.46	20.66
GSMUA_Achr1P21300_001	Banana	nucleus	18.36	19.96
GSMUA_Achr7P05850_001	Banana	mitochondrion	22.82	19.69
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	24.24	19.24
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.96	16.24
GSMUA_Achr11P...	Banana	cytosol	21.75	11.07

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07320_001	EnsemblPlants:GSMUA_Achr4T07320_001	EnsemblPlantsGene:GSMUA_Achr4G07320_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000295C556
UniProt:M0SLU9	MapMan:15.5.12	:	:	:	:

Description

Scarecrow-like protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G07320_001]

Coordinates

chr4:+:5454250..5456801

Molecular Weight (calculated)

61511.2 Da

IEP (calculated)

5.436

GRAVY (calculated)

-0.060

Length

561 amino acids

Sequence
(BLAST)

001: MAYMCADSGN LMAIAQQHAS DHFPFVIPDP AAAFADPFAP DPIPGFLPPG GDSGRHLDHG HFRMSDFGSS AATVAAEFDS DEWMESLIGE SPAESSIPPL
101: ALVQHHQAAA RSISSPPLLE SLLQCARLAD SDPHLATKSL IHVRESASEL GDPTERVAFY FAEALHRRLL GAQRKHPLPT SAPQPPSLDS SPEEFTLCYK
201: VLNDACPYFK FAQLTANQAI IEATESAGRI HIVDFGIVQG VQWPSLLQAL ATRPSGKPSK VRISGIPAPA LGGAAIATSL AATGNRLRDF AALLDLDFEF
301: DCILTPIPEI AASTFRVDPD ELVVVNFMLQ LSQLLGDSPE PVERVLRVAK SLGPRILTLA EYEASLNHAG FVDRFGAALG HYAAVFESLD PAMGRDAVER
401: ARMERVLIGH RILEAVGPFE GQNRRVRMAP KEEWRAVMER CGFSSVPLSN YAVSQAKLLL WNYNYSSRYT LLDSPPPCLT LAWGDRPLLT VSSWRYFHFW
501: LVGQMVNCGE RVASFSIEGC QTGRLFGEGR DTVFLFNREM EQNWSGFFVS FFDTGISQHR P

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.