CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	CDX73678	AT3G51920.1	17360592
AT5G66770.1	CDX95314	AT3G51920.1	17360592
AT5G66770.1	CDY23174	AT3G51920.1	17360592
AT5G66770.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012102.1-P	Field mustard	cytosol	28.55	99.4
CDY53846	Canola	cytosol	96.75	97.08
AT5G66770.1	Thale cress	cytosol	79.83	79.97
KRH29015	Soybean	cytosol	33.85	69.47
KRH24039	Soybean	cytosol	51.11	62.16
Solyc02g085340.1.1	Tomato	cytosol	58.8	56.49
PGSC0003DMT400038574	Potato	cytosol	58.8	56.3
VIT_04s0023g01660.t01	Wine grape	cytosol	56.75	54.16
GSMUA_Achr3P30530_001	Banana	cytosol	49.23	49.91
GSMUA_AchrUn_...	Banana	cytosol	44.96	49.16
Zm00001d033834_P001	Maize	cytosol, plastid	45.3	48.09
TraesCS4B01G054000.1	Wheat	cytosol	44.79	47.9
TraesCS4A01G260600.1	Wheat	cytosol	44.1	47.34
TraesCS4D01G054000.1	Wheat	cytosol	44.44	47.27
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	45.13	47.23
Zm00001d013385_P001	Maize	cytosol, plastid	45.64	46.92
Os03t0723000-01	Rice	nucleus	44.96	45.5
GSMUA_Achr4P07320_001	Banana	cytosol	43.59	45.45
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	24.62	40.79
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	36.24	38.34
CDY64484	Canola	mitochondrion	14.36	34.15
CDY45059	Canola	cytosol	17.44	33.55
CDY43123	Canola	cytosol, extracellular, plastid	3.42	32.79
CDY50706	Canola	cytosol, extracellular, plastid	3.42	32.79
CDY68881	Canola	cytosol	12.65	30.33
CDY50028	Canola	nucleus, plastid	21.03	29.5
CDY54362	Canola	plastid	21.03	29.22
CDY27670	Canola	cytosol	20.17	29.21
CDY03601	Canola	cytosol	22.22	28.95
CDY22795	Canola	cytosol, plastid	21.37	28.15
CDY70426	Canola	cytosol	22.05	25.44
CDY55037	Canola	cytosol	21.88	25.25
CDY38434	Canola	cytosol	21.37	24.51
CDY16915	Canola	cytosol, nucleus, plastid	21.2	23.62
CDY49199	Canola	plastid	25.13	23.26
CDY47352	Canola	plastid	24.96	22.92
CDY36236	Canola	cytosol, nucleus, plastid	21.37	22.48
CDY70213	Canola	plastid	24.62	22.39
CDX78219	Canola	nucleus, plastid	22.91	22.22
CDY45974	Canola	plastid	24.44	22.17
CDY17662	Canola	cytosol, nucleus, plastid	21.54	22.03
CDX73496	Canola	nucleus, plastid	22.91	21.54
CDY04092	Canola	cytosol	19.32	21.16
CDY64837	Canola	cytosol	19.15	20.66
CDY43122	Canola	nucleus	12.82	17.99
CDY50707	Canola	cytosol, nucleus, plastid	12.65	17.79
CDY37137	Canola	plastid	21.03	12.89

Protein Annotations

EnsemblPlants:CDY72338	EnsemblPlantsGene:GSBRNA2T00027817001	GO:A0A078JXJ2	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY72338	ProteinID:CDY72338.1
SEG:seg	UniParc:UPI0004EEADC9	UniProt:A0A078JXJ2	MapMan:15.5.12	:	:

Description

BnaCnng77180DBnaCnng77180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXJ2]

Coordinates

chrLK050285:+:163..1959

Molecular Weight (calculated)

63488.5 Da

IEP (calculated)

4.611

GRAVY (calculated)

-0.221

Length

585 amino acids

Sequence
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQPQ DHQIFGINPL SLNPWPTANT QSLGFGLSGS GFPDPFQVNG GGDPGDSGFP FHSLEHHHPT AGGGGGGGGF
101: RLSDFDGGTG GEFESDEWME TLITGGDSVA AAEGPDCDTW QNNNDFVIYG RDPFAAYPSS QPSDLNQVVA TSTSLPSALW APSSPLSAPP LPSLSPPHGG
201: SGPHDFDLEP PLLRAIYDCS LILDSSESED AAKALVRIKK SVSEHGDPTE RVGYHFTEAL CNRLSPDSVS NDSSQSQAAA IVENLILSYK TLNDACPYFK
301: FAHLTANQAI LEATEHSSKI HIVDFGIVQG IQWPALLQAL ATRSSGKPAQ VRISGIPAPS SLGQSPEPSL IATGNRLRDF AKVLDLNFDF IPVLTPIHLL
401: NGSSFRVDPD EALAVNFMLQ LYKLLDETPA VFDTALRLAR SLNPMVVTLG EYDVSLNRVG FANRVKNALH FYSAVFESLE PSLGRDSEER LRVERVMFGR
501: TISGLIGPEI TGNQRLRMEG KEQWRVLMEN AGFESVKLSN YAVSQAEILL WNYNYSSLYS IVESKPGFVS LAWNDLPLLT VSSWR

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.