CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79294
CDX82568
CDX87407
CDX88507
CDX90230	nucleus
CDX94520
CDX99884	nucleus
CDY01615
CDY07541
CDY09318
CDY13070
CDY18062
CDY21311
CDY23552
CDY24237
CDY26288	nucleus
CDY26402
CDY26697	nucleus
CDY41023	nucleus
CDY43390
CDY46345
CDY51470	nucleus
CDY51918
CDY64561
CDY71192
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17490.1	CDY26697	AT1G19180.1	22892320
AT5G17490.1	CDY41023	AT1G19180.1	22892320
AT5G17490.1	CDY26697	AT1G19180.1	22892320
AT5G17490.1	CDY41023	AT1G19180.1	22892320
AT5G17490.1	CDX90230	AT1G30135.1	22892320
AT5G17490.1	CDX99884	AT1G30135.1	22892320
AT5G17490.1	CDY26288	AT1G30135.1	22892320
AT5G17490.1	CDY51470	AT1G30135.1	22892320
AT5G17490.1	CDX90230	AT1G30135.1	22892320
AT5G17490.1	CDX99884	AT1G30135.1	22892320
AT5G17490.1	CDY26288	AT1G30135.1	22892320
AT5G17490.1	CDY51470	AT1G30135.1	22892320
AT5G17490.1	CDX79294	AT1G79110.1	23482857
AT5G17490.1	CDX87407	AT1G79110.1	23482857
AT5G17490.1	CDX88507	AT1G79110.1	23482857
AT5G17490.1	CDX82568	AT3G12920.1	23482857
AT5G17490.1	CDY23552	AT3G12920.1	23482857
AT5G17490.1	CDY24237	AT3G12920.1	23482857
AT5G17490.1	CDY43390	AT3G12920.1	23482857
AT5G17490.1	CDY64561	AT3G12920.1	23482857
AT5G17490.1	CDX94520	AT4G19700.1	23482857
AT5G17490.1	CDY01615	AT4G19700.1	23482857
AT5G17490.1	CDY07541	AT4G19700.1	23482857
AT5G17490.1	CDY09318	AT4G19700.1	23482857
AT5G17490.1	CDY21311	AT4G19700.1	23482857
AT5G17490.1	CDY51918	AT4G19700.1	23482857
AT5G17490.1	CDY71607	AT4G19700.1	23482857
AT5G17490.1	CDY13070	AT5G45100.1	23482857
AT5G17490.1	CDY18062	AT5G45100.1	23482857
AT5G17490.1	CDY26402	AT5G45100.1	23482857
AT5G17490.1	CDY46345	AT5G45100.1	23482857
AT5G17490.1	CDY71192	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013973.1-P	Field mustard	cytosol	98.43	95.62
CDY16915	Canola	cytosol, nucleus, plastid	97.45	94.67
AT5G17490.1	Thale cress	cytosol	83.33	81.26
CDY50706	Canola	cytosol, extracellular, plastid	8.82	73.77
CDY43123	Canola	cytosol, extracellular, plastid	8.82	73.77
CDY55037	Canola	cytosol	61.37	61.74
CDY70426	Canola	cytosol	61.18	61.54
CDY50707	Canola	cytosol, nucleus, plastid	46.08	56.49
CDY43122	Canola	nucleus	46.08	56.35
KRG97933	Soybean	nucleus	63.33	55.31
CDY36236	Canola	cytosol, nucleus, plastid	59.22	54.32
KRH30942	Soybean	cytosol	63.14	54.12
Solyc11g011260.1.1	Tomato	nucleus	60.59	52.55
CDY17662	Canola	cytosol, nucleus, plastid	58.82	52.45
PGSC0003DMT400040589	Potato	nucleus	60.39	52.38
CDY04092	Canola	cytosol	52.94	50.56
CDY64837	Canola	cytosol	53.53	50.37
CDY45059	Canola	cytosol	21.18	35.53
CDY64484	Canola	mitochondrion	17.06	35.37
CDY68881	Canola	cytosol	15.49	32.38
CDY03601	Canola	cytosol	27.06	30.73
CDY27670	Canola	cytosol	24.31	30.69
CDY22795	Canola	cytosol, plastid	26.47	30.41
CDY50028	Canola	nucleus, plastid	23.92	29.26
CDY54362	Canola	plastid	23.73	28.74
CDX78219	Canola	nucleus, plastid	28.43	24.05
CDX73496	Canola	nucleus, plastid	28.63	23.47
CDY49199	Canola	plastid	26.86	21.68
CDY70213	Canola	plastid	27.06	21.46
CDY45974	Canola	plastid	27.06	21.4
CDY72338	Canola	cytosol	24.51	21.37
CDY47352	Canola	plastid	26.67	21.35
CDY53846	Canola	cytosol	24.31	21.27
CDY37137	Canola	plastid	26.47	14.15

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	GO:A0A078HM39	UniProt:A0A078HM39
EnsemblPlants:CDY38434	ProteinID:CDY38434	ProteinID:CDY38434.1	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00065871001	InterPro:IPR005202	InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0004EE239E	SEG:seg	:	:	:	:

Description

BnaA10g17240DBnaA10g17240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM39]

Coordinates

chrLK032424:-:39333..41122

Molecular Weight (calculated)

56013.3 Da

IEP (calculated)

4.454

GRAVY (calculated)

-0.167

Length

510 amino acids

Sequence
(BLAST)

001: MGKKLEDDNN MDEFLSALGY KVRSSDMADV AQKLEQLEVV LSNDDVLDSN ALNDTVHYNP SDLSSWAETM LSELNYYPPS LDLDPTRMCN LTPFSDDNEC
101: SSTTSDNSSK RIRLGPWCDS SESTRPVVML GVDSQETGVR LVQALVACAE AVHQENLILA DALVKRVGSL AASQAGAMGK VATYFAEALA RRIYRIRPSS
201: PAVDPSFEEI LQMHFYESCP YLKFAHFTAN QAILEAVATA RGVHVIDLGI NQGMQWPALM QALALRPGGS PSFRLTGVGG PSEGDGIQQL GWKLAQLAQA
301: IGVEFEFKGL TVERLTDLEP EMFETRPESE TLVVNSVFEL HQLLAQPGSI EKLLATVKAV KPSILTVVEQ EANHNGVVFL ERFNEALHYY SSLFDSLEDG
401: VIIPSQDRVM SEVYLGRQIL NVVAAEGTDR IERHETLDQW RKRMGSAGFD PVSLGSDAFK QASLLLALSG GGDGYRVEEN DGSLMLAWQT KPLIAASAWK
501: VSDVTAEWRR

Best Arabidopsis Sequence Match ( AT5G17490.1 )
(BLAST)

001: MKRSHQETSV EEEAPSMVEK LENGCGGGGD DNMDEFLAVL GYKVRSSDMA DVAQKLEQLE MVLSNDIASS SNAFNDTVHY NPSDLSGWAQ SMLSDLNYYP
101: DLDPNRICDL RPITDDDECC SSNSNSNKRI RLGPWCDSVT SESTRSVVLI EETGVRLVQA LVACAEAVQL ENLSLADALV KRVGLLAASQ AGAMGKVATY
201: FAEALARRIY RIHPSAAAID PSFEEILQMN FYDSCPYLKF AHFTANQAIL EAVTTSRVVH VIDLGLNQGM QWPALMQALA LRPGGPPSFR LTGVGNPSNR
301: EGIQELGWKL AQLAQAIGVE FKFNGLTTER LSDLEPDMFE TRTESETLVV NSVFELHPVL SQPGSIEKLL ATVKAVKPGL VTVVEQEANH NGDVFLDRFN
401: EALHYYSSLF DSLEDGVVIP SQDRVMSEVY LGRQILNLVA TEGSDRIERH ETLAQWRKRM GSAGFDPVNL GSDAFKQASL LLALSGGGDG YRVEENDGSL
501: MLAWQTKPLI AASAWKLAAE LRR

Arabidopsis Description

RGL3DELLA protein RGL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.